Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06440

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06435 and BWI76_RS06440 are separated by 10 nucleotidesBWI76_RS06440 and BWI76_RS06445 are separated by 65 nucleotides BWI76_RS06435: BWI76_RS06435 - MFS transporter, at 1,352,150 to 1,353,514 _RS06435 BWI76_RS06440: BWI76_RS06440 - AP endonuclease, at 1,353,525 to 1,354,343 _RS06440 BWI76_RS06445: BWI76_RS06445 - FAD-dependent oxidoreductase, at 1,354,409 to 1,356,112 _RS06445 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -1 0 1at 1352.564 kb on - strand, within BWI76_RS06435at 1353.498 kb on - strandat 1354.045 kb on + strand, within BWI76_RS06440at 1354.360 kb on + strandat 1354.614 kb on + strand, within BWI76_RS06445at 1354.718 kb on + strand, within BWI76_RS06445at 1354.869 kb on + strand, within BWI76_RS06445at 1354.882 kb on + strand, within BWI76_RS06445at 1354.882 kb on + strand, within BWI76_RS06445at 1354.925 kb on + strand, within BWI76_RS06445at 1355.069 kb on - strand, within BWI76_RS06445at 1355.225 kb on - strand, within BWI76_RS06445at 1355.316 kb on - strand, within BWI76_RS06445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
1,352,564 - BWI76_RS06435 0.30 +0.6
1,353,498 - -0.3
1,354,045 + BWI76_RS06440 0.63 +0.5
1,354,360 + -0.9
1,354,614 + BWI76_RS06445 0.12 +0.0
1,354,718 + BWI76_RS06445 0.18 -0.7
1,354,869 + BWI76_RS06445 0.27 -0.2
1,354,882 + BWI76_RS06445 0.28 +0.8
1,354,882 + BWI76_RS06445 0.28 +0.9
1,354,925 + BWI76_RS06445 0.30 -0.3
1,355,069 - BWI76_RS06445 0.39 +0.0
1,355,225 - BWI76_RS06445 0.48 +0.2
1,355,316 - BWI76_RS06445 0.53 -0.8

Or see this region's nucleotide sequence