Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06055

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06050 and BWI76_RS06055 are separated by 84 nucleotidesBWI76_RS06055 and BWI76_RS06060 overlap by 1 nucleotidesBWI76_RS06060 and BWI76_RS06065 are separated by 252 nucleotides BWI76_RS06050: BWI76_RS06050 - MFS transporter family glucose-6-phosphate receptor UhpC, at 1,271,089 to 1,272,390 _RS06050 BWI76_RS06055: BWI76_RS06055 - MASE1 sensor histidine kinase, at 1,272,475 to 1,274,016 _RS06055 BWI76_RS06060: BWI76_RS06060 - DNA-binding response regulator, at 1,274,016 to 1,274,645 _RS06060 BWI76_RS06065: BWI76_RS06065 - taurine ABC transporter substrate-binding protein, at 1,274,898 to 1,275,860 _RS06065 Position (kb) 1272 1273 1274 1275Strain fitness (log2 ratio) -1 0 1at 1271.579 kb on + strand, within BWI76_RS06050at 1271.579 kb on - strand, within BWI76_RS06050at 1271.608 kb on - strand, within BWI76_RS06050at 1271.804 kb on + strand, within BWI76_RS06050at 1271.951 kb on - strandat 1271.990 kb on - strand, within BWI76_RS06050at 1272.008 kb on + strand, within BWI76_RS06050at 1272.205 kb on - strand, within BWI76_RS06050at 1272.238 kb on - strand, within BWI76_RS06050at 1272.456 kb on + strandat 1272.544 kb on + strandat 1272.563 kb on + strandat 1272.642 kb on + strand, within BWI76_RS06055at 1272.666 kb on + strand, within BWI76_RS06055at 1272.721 kb on + strand, within BWI76_RS06055at 1273.045 kb on + strand, within BWI76_RS06055at 1273.642 kb on - strand, within BWI76_RS06055at 1273.658 kb on + strand, within BWI76_RS06055at 1273.659 kb on - strand, within BWI76_RS06055at 1273.719 kb on - strand, within BWI76_RS06055at 1273.961 kb on + strandat 1274.161 kb on - strand, within BWI76_RS06060at 1274.461 kb on - strand, within BWI76_RS06060at 1274.487 kb on - strand, within BWI76_RS06060at 1274.529 kb on + strand, within BWI76_RS06060at 1274.550 kb on - strand, within BWI76_RS06060at 1274.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,271,579 + BWI76_RS06050 0.38 +0.1
1,271,579 - BWI76_RS06050 0.38 -0.7
1,271,608 - BWI76_RS06050 0.40 +0.4
1,271,804 + BWI76_RS06050 0.55 -0.0
1,271,951 - -1.3
1,271,990 - BWI76_RS06050 0.69 -0.8
1,272,008 + BWI76_RS06050 0.71 +0.1
1,272,205 - BWI76_RS06050 0.86 -0.7
1,272,238 - BWI76_RS06050 0.88 +0.4
1,272,456 + -0.9
1,272,544 + -0.7
1,272,563 + -0.3
1,272,642 + BWI76_RS06055 0.11 +1.1
1,272,666 + BWI76_RS06055 0.12 -0.2
1,272,721 + BWI76_RS06055 0.16 +1.0
1,273,045 + BWI76_RS06055 0.37 +0.1
1,273,642 - BWI76_RS06055 0.76 +0.6
1,273,658 + BWI76_RS06055 0.77 +0.5
1,273,659 - BWI76_RS06055 0.77 +0.2
1,273,719 - BWI76_RS06055 0.81 +1.3
1,273,961 + +0.1
1,274,161 - BWI76_RS06060 0.23 -0.8
1,274,461 - BWI76_RS06060 0.71 +0.6
1,274,487 - BWI76_RS06060 0.75 -0.2
1,274,529 + BWI76_RS06060 0.81 +0.3
1,274,550 - BWI76_RS06060 0.85 +1.0
1,274,990 - +0.5

Or see this region's nucleotide sequence