Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04575 and BWI76_RS04580 are separated by 214 nucleotides BWI76_RS04580 and BWI76_RS04585 are separated by 73 nucleotides
BWI76_RS04575: BWI76_RS04575 - DNA polymerase II, at 949,877 to 952,234
_RS04575
BWI76_RS04580: BWI76_RS04580 - L-ribulose-5-phosphate 4-epimerase, at 952,449 to 953,144
_RS04580
BWI76_RS04585: BWI76_RS04585 - L-arabinose isomerase, at 953,218 to 954,720
_RS04585
Position (kb) 952
953
954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 951.556 kb on + strand, within BWI76_RS04575 at 951.723 kb on - strand, within BWI76_RS04575 at 951.734 kb on - strand, within BWI76_RS04575 at 952.102 kb on - strand at 952.274 kb on - strand at 952.441 kb on - strand at 952.643 kb on + strand, within BWI76_RS04580 at 952.865 kb on - strand, within BWI76_RS04580 at 952.865 kb on - strand, within BWI76_RS04580 at 952.915 kb on - strand, within BWI76_RS04580 at 952.935 kb on - strand, within BWI76_RS04580 at 952.947 kb on - strand, within BWI76_RS04580 at 953.039 kb on + strand, within BWI76_RS04580 at 953.089 kb on + strand at 953.270 kb on - strand at 953.348 kb on - strand at 953.352 kb on + strand at 953.360 kb on - strand at 953.367 kb on - strand at 953.377 kb on - strand, within BWI76_RS04585 at 953.393 kb on + strand, within BWI76_RS04585 at 953.555 kb on - strand, within BWI76_RS04585 at 953.557 kb on + strand, within BWI76_RS04585 at 953.558 kb on + strand, within BWI76_RS04585 at 953.652 kb on - strand, within BWI76_RS04585 at 953.722 kb on - strand, within BWI76_RS04585 at 953.743 kb on + strand, within BWI76_RS04585 at 953.916 kb on + strand, within BWI76_RS04585 at 953.924 kb on - strand, within BWI76_RS04585 at 953.965 kb on - strand, within BWI76_RS04585 at 954.053 kb on + strand, within BWI76_RS04585 at 954.090 kb on + strand, within BWI76_RS04585 at 954.092 kb on + strand, within BWI76_RS04585 at 954.097 kb on + strand, within BWI76_RS04585
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 951,556 + BWI76_RS04575 0.71 -0.3 951,723 - BWI76_RS04575 0.78 +0.2 951,734 - BWI76_RS04575 0.79 -0.0 952,102 - -0.1 952,274 - +0.0 952,441 - -0.1 952,643 + BWI76_RS04580 0.28 -1.0 952,865 - BWI76_RS04580 0.60 -1.1 952,865 - BWI76_RS04580 0.60 +0.1 952,915 - BWI76_RS04580 0.67 -0.4 952,935 - BWI76_RS04580 0.70 -0.5 952,947 - BWI76_RS04580 0.72 -0.2 953,039 + BWI76_RS04580 0.85 -4.0 953,089 + -0.3 953,270 - +0.8 953,348 - +0.5 953,352 + +0.4 953,360 - -3.6 953,367 - +1.0 953,377 - BWI76_RS04585 0.11 +0.4 953,393 + BWI76_RS04585 0.12 -1.3 953,555 - BWI76_RS04585 0.22 +1.0 953,557 + BWI76_RS04585 0.23 +0.7 953,558 + BWI76_RS04585 0.23 -0.1 953,652 - BWI76_RS04585 0.29 +0.2 953,722 - BWI76_RS04585 0.34 -0.5 953,743 + BWI76_RS04585 0.35 +0.2 953,916 + BWI76_RS04585 0.46 -0.1 953,924 - BWI76_RS04585 0.47 +0.3 953,965 - BWI76_RS04585 0.50 -2.1 954,053 + BWI76_RS04585 0.56 +0.8 954,090 + BWI76_RS04585 0.58 +0.0 954,092 + BWI76_RS04585 0.58 -0.1 954,097 + BWI76_RS04585 0.58 -0.5
Or see this region's nucleotide sequence