Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20545 and BWI76_RS20550 are separated by 202 nucleotides BWI76_RS20550 and BWI76_RS20555 are separated by 41 nucleotides BWI76_RS20555 and BWI76_RS20560 are separated by 219 nucleotides BWI76_RS20560 and BWI76_RS20565 are separated by 4 nucleotides BWI76_RS20565 and BWI76_RS20570 are separated by 57 nucleotides
BWI76_RS20545: BWI76_RS20545 - sensor domain-containing phosphodiesterase, at 4,303,715 to 4,305,895
_RS20545
BWI76_RS20550: BWI76_RS20550 - tRNA-Ala, at 4,306,098 to 4,306,173
_RS20550
BWI76_RS20555: BWI76_RS20555 - tRNA-Ala, at 4,306,215 to 4,306,290
_RS20555
BWI76_RS20560: BWI76_RS20560 - hypothetical protein, at 4,306,510 to 4,306,863
_RS20560
BWI76_RS20565: BWI76_RS20565 - hypothetical protein, at 4,306,868 to 4,307,263
_RS20565
BWI76_RS20570: BWI76_RS20570 - glutamate--tRNA ligase, at 4,307,321 to 4,308,739
_RS20570
Position (kb)
4306
4307
4308 Strain fitness (log2 ratio)
-2
-1
0
1 at 4305.878 kb on - strand at 4305.956 kb on + strand at 4306.006 kb on + strand at 4306.019 kb on - strand at 4306.021 kb on - strand at 4306.344 kb on + strand at 4306.509 kb on - strand at 4306.531 kb on - strand at 4306.563 kb on - strand, within BWI76_RS20560 at 4306.637 kb on - strand, within BWI76_RS20560 at 4306.639 kb on - strand, within BWI76_RS20560 at 4307.110 kb on - strand, within BWI76_RS20565 at 4307.155 kb on - strand, within BWI76_RS20565 at 4307.185 kb on - strand, within BWI76_RS20565 at 4307.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,305,878 - +0.5 4,305,956 + +0.6 4,306,006 + +0.1 4,306,019 - -1.6 4,306,021 - +1.3 4,306,344 + +0.1 4,306,509 - -0.0 4,306,531 - -0.0 4,306,563 - BWI76_RS20560 0.15 -0.7 4,306,637 - BWI76_RS20560 0.36 -0.0 4,306,639 - BWI76_RS20560 0.36 -0.0 4,307,110 - BWI76_RS20565 0.61 -1.7 4,307,155 - BWI76_RS20565 0.72 -0.3 4,307,185 - BWI76_RS20565 0.80 -2.1 4,307,247 - -0.1
Or see this region's nucleotide sequence