Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15810 and BWI76_RS15815 overlap by 4 nucleotides BWI76_RS15815 and BWI76_RS15820 are separated by 322 nucleotides BWI76_RS15820 and BWI76_RS15825 are separated by 427 nucleotides BWI76_RS15825 and BWI76_RS15830 are separated by 88 nucleotides
BWI76_RS15810: BWI76_RS15810 - hypothetical protein, at 3,288,347 to 3,288,781
_RS15810
BWI76_RS15815: BWI76_RS15815 - hypothetical protein, at 3,288,778 to 3,289,425
_RS15815
BWI76_RS15820: BWI76_RS15820 - hypothetical protein, at 3,289,748 to 3,289,951
_RS15820
BWI76_RS15825: BWI76_RS15825 - hypothetical protein, at 3,290,379 to 3,290,573
_RS15825
BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666
_RS15830
Position (kb) 3289
3290 Strain fitness (log2 ratio) -9
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 3288.832 kb on + strand at 3288.832 kb on + strand at 3288.832 kb on + strand at 3288.833 kb on + strand at 3288.850 kb on - strand, within BWI76_RS15815 at 3288.900 kb on + strand, within BWI76_RS15815 at 3288.901 kb on + strand at 3288.912 kb on + strand, within BWI76_RS15815 at 3288.959 kb on - strand, within BWI76_RS15815 at 3288.966 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.038 kb on - strand, within BWI76_RS15815 at 3289.038 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.197 kb on - strand, within BWI76_RS15815 at 3289.202 kb on - strand, within BWI76_RS15815 at 3289.202 kb on - strand, within BWI76_RS15815 at 3289.297 kb on + strand, within BWI76_RS15815 at 3289.305 kb on + strand, within BWI76_RS15815 at 3289.311 kb on + strand, within BWI76_RS15815 at 3289.336 kb on + strand, within BWI76_RS15815 at 3289.392 kb on - strand at 3289.664 kb on + strand at 3289.672 kb on - strand at 3289.753 kb on - strand at 3290.312 kb on + strand at 3290.455 kb on + strand, within BWI76_RS15825 at 3290.553 kb on + strand, within BWI76_RS15825 at 3290.576 kb on + strand at 3290.743 kb on + strand at 3290.827 kb on + strand, within BWI76_RS15830 at 3290.862 kb on - strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.877 kb on - strand, within BWI76_RS15830 at 3290.889 kb on + strand, within BWI76_RS15830
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,288,832 + -0.0 3,288,832 + -0.3 3,288,832 + +0.4 3,288,833 + -0.7 3,288,850 - BWI76_RS15815 0.11 +0.0 3,288,900 + BWI76_RS15815 0.19 -0.2 3,288,901 + -1.3 3,288,912 + BWI76_RS15815 0.21 -0.4 3,288,959 - BWI76_RS15815 0.28 -2.4 3,288,966 + BWI76_RS15815 0.29 +0.4 3,289,030 + BWI76_RS15815 0.39 -0.2 3,289,030 + BWI76_RS15815 0.39 -0.8 3,289,030 + BWI76_RS15815 0.39 +0.5 3,289,036 + BWI76_RS15815 0.40 -0.2 3,289,036 + +0.8 3,289,036 + BWI76_RS15815 0.40 -0.2 3,289,036 + BWI76_RS15815 0.40 -0.8 3,289,038 - BWI76_RS15815 0.40 -0.3 3,289,038 - BWI76_RS15815 0.40 +0.6 3,289,044 - BWI76_RS15815 0.41 -0.6 3,289,044 - BWI76_RS15815 0.41 -0.6 3,289,044 - BWI76_RS15815 0.41 -0.7 3,289,197 - BWI76_RS15815 0.65 -0.3 3,289,202 - BWI76_RS15815 0.65 -0.3 3,289,202 - BWI76_RS15815 0.65 +0.9 3,289,297 + BWI76_RS15815 0.80 -0.3 3,289,305 + BWI76_RS15815 0.81 -0.6 3,289,311 + BWI76_RS15815 0.82 -0.5 3,289,336 + BWI76_RS15815 0.86 -0.9 3,289,392 - +0.1 3,289,664 + -0.2 3,289,672 - -0.2 3,289,753 - -0.5 3,290,312 + -4.9 3,290,455 + BWI76_RS15825 0.39 -3.7 3,290,553 + BWI76_RS15825 0.89 -5.9 3,290,576 + -6.7 3,290,743 + -9.3 3,290,827 + BWI76_RS15830 0.16 -8.8 3,290,862 - BWI76_RS15830 0.20 -0.8 3,290,869 + BWI76_RS15830 0.21 -8.6 3,290,869 + BWI76_RS15830 0.21 -7.0 3,290,877 - BWI76_RS15830 0.21 -0.6 3,290,889 + BWI76_RS15830 0.23 -7.4
Or see this region's nucleotide sequence