Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02730 and BWI76_RS02735 are separated by 191 nucleotides BWI76_RS02735 and BWI76_RS02740 overlap by 11 nucleotides BWI76_RS02740 and BWI76_RS02745 are separated by 322 nucleotides
BWI76_RS02730: BWI76_RS02730 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 552,455 to 554,398
_RS02730
BWI76_RS02735: BWI76_RS02735 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 554,590 to 555,333
_RS02735
BWI76_RS02740: BWI76_RS02740 - putative transcriptional regulator, at 555,323 to 555,880
_RS02740
BWI76_RS02745: BWI76_RS02745 - hypothetical protein, at 556,203 to 556,409
_RS02745
Position (kb) 554
555
556 Strain fitness (log2 ratio) -1
0
1 at 553.902 kb on + strand, within BWI76_RS02730 at 553.991 kb on + strand, within BWI76_RS02730 at 554.159 kb on + strand, within BWI76_RS02730 at 554.203 kb on - strand, within BWI76_RS02730 at 554.227 kb on + strand at 554.227 kb on + strand at 554.267 kb on + strand at 554.380 kb on - strand at 554.390 kb on - strand at 554.431 kb on + strand at 554.567 kb on + strand at 554.567 kb on + strand at 554.736 kb on - strand, within BWI76_RS02735 at 554.803 kb on - strand, within BWI76_RS02735 at 554.963 kb on - strand, within BWI76_RS02735 at 555.079 kb on - strand, within BWI76_RS02735 at 555.173 kb on - strand, within BWI76_RS02735 at 555.207 kb on - strand, within BWI76_RS02735 at 555.478 kb on - strand, within BWI76_RS02740 at 555.568 kb on + strand, within BWI76_RS02740 at 555.634 kb on - strand, within BWI76_RS02740 at 555.683 kb on + strand, within BWI76_RS02740 at 555.683 kb on + strand, within BWI76_RS02740 at 555.763 kb on + strand, within BWI76_RS02740 at 555.775 kb on + strand, within BWI76_RS02740 at 555.798 kb on - strand, within BWI76_RS02740 at 555.874 kb on + strand at 555.882 kb on - strand at 555.883 kb on - strand at 556.228 kb on - strand, within BWI76_RS02745
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 553,902 + BWI76_RS02730 0.74 -0.4 553,991 + BWI76_RS02730 0.79 +0.1 554,159 + BWI76_RS02730 0.88 -0.3 554,203 - BWI76_RS02730 0.90 -0.2 554,227 + -0.3 554,227 + +0.0 554,267 + -0.8 554,380 - +0.6 554,390 - -0.1 554,431 + -0.0 554,567 + +0.0 554,567 + +0.1 554,736 - BWI76_RS02735 0.20 +0.1 554,803 - BWI76_RS02735 0.29 -1.2 554,963 - BWI76_RS02735 0.50 -0.5 555,079 - BWI76_RS02735 0.66 -0.2 555,173 - BWI76_RS02735 0.78 -1.2 555,207 - BWI76_RS02735 0.83 -1.1 555,478 - BWI76_RS02740 0.28 -0.3 555,568 + BWI76_RS02740 0.44 -0.2 555,634 - BWI76_RS02740 0.56 -0.2 555,683 + BWI76_RS02740 0.65 -0.5 555,683 + BWI76_RS02740 0.65 +0.3 555,763 + BWI76_RS02740 0.79 +0.2 555,775 + BWI76_RS02740 0.81 -0.2 555,798 - BWI76_RS02740 0.85 +0.3 555,874 + -0.1 555,882 - -0.0 555,883 - +0.2 556,228 - BWI76_RS02745 0.12 -0.3
Or see this region's nucleotide sequence