Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26355 and BWI76_RS26360 are separated by 31 nucleotides BWI76_RS26360 and BWI76_RS26365 are separated by 248 nucleotides BWI76_RS26365 and BWI76_RS26370 are separated by 241 nucleotides
BWI76_RS26355: BWI76_RS26355 - hypothetical protein, at 5,455,620 to 5,455,855
_RS26355
BWI76_RS26360: BWI76_RS26360 - aspartate 1-decarboxylase autocleavage activator PanM, at 5,455,887 to 5,456,273
_RS26360
BWI76_RS26365: BWI76_RS26365 - branched chain amino acid ABC transporter substrate-binding protein, at 5,456,522 to 5,457,640
_RS26365
BWI76_RS26370: BWI76_RS26370 - aromatic amino acid transporter, at 5,457,882 to 5,459,126
_RS26370
Position (kb) 5456
5457
5458 Strain fitness (log2 ratio) -2
-1
0
1 at 5455.552 kb on + strand at 5455.770 kb on + strand, within BWI76_RS26355 at 5455.770 kb on + strand, within BWI76_RS26355 at 5455.775 kb on + strand, within BWI76_RS26355 at 5455.778 kb on - strand, within BWI76_RS26355 at 5455.783 kb on - strand, within BWI76_RS26355 at 5455.924 kb on - strand at 5455.924 kb on - strand at 5456.600 kb on - strand at 5456.689 kb on - strand, within BWI76_RS26365 at 5456.710 kb on + strand, within BWI76_RS26365 at 5456.850 kb on + strand, within BWI76_RS26365 at 5456.858 kb on - strand, within BWI76_RS26365 at 5457.085 kb on - strand, within BWI76_RS26365 at 5457.092 kb on + strand, within BWI76_RS26365 at 5457.105 kb on + strand, within BWI76_RS26365 at 5457.262 kb on + strand, within BWI76_RS26365 at 5457.301 kb on - strand, within BWI76_RS26365 at 5457.599 kb on + strand at 5457.609 kb on - strand at 5457.808 kb on + strand at 5457.818 kb on - strand at 5457.818 kb on - strand at 5457.866 kb on + strand at 5457.911 kb on - strand at 5457.929 kb on - strand at 5458.108 kb on + strand, within BWI76_RS26370 at 5458.110 kb on + strand, within BWI76_RS26370 at 5458.110 kb on + strand, within BWI76_RS26370 at 5458.165 kb on + strand, within BWI76_RS26370 at 5458.174 kb on - strand, within BWI76_RS26370 at 5458.192 kb on + strand, within BWI76_RS26370 at 5458.210 kb on - strand, within BWI76_RS26370 at 5458.252 kb on - strand at 5458.369 kb on - strand, within BWI76_RS26370 at 5458.415 kb on - strand, within BWI76_RS26370 at 5458.416 kb on - strand, within BWI76_RS26370 at 5458.602 kb on - strand, within BWI76_RS26370 at 5458.614 kb on + strand, within BWI76_RS26370 at 5458.614 kb on + strand, within BWI76_RS26370 at 5458.622 kb on - strand, within BWI76_RS26370
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,455,552 + +0.4 5,455,770 + BWI76_RS26355 0.64 +0.5 5,455,770 + BWI76_RS26355 0.64 +0.6 5,455,775 + BWI76_RS26355 0.66 +0.4 5,455,778 - BWI76_RS26355 0.67 +0.5 5,455,783 - BWI76_RS26355 0.69 -0.5 5,455,924 - +0.3 5,455,924 - -0.2 5,456,600 - -0.3 5,456,689 - BWI76_RS26365 0.15 -0.3 5,456,710 + BWI76_RS26365 0.17 -1.0 5,456,850 + BWI76_RS26365 0.29 -0.5 5,456,858 - BWI76_RS26365 0.30 -0.4 5,457,085 - BWI76_RS26365 0.50 -0.6 5,457,092 + BWI76_RS26365 0.51 -0.9 5,457,105 + BWI76_RS26365 0.52 -1.2 5,457,262 + BWI76_RS26365 0.66 -1.9 5,457,301 - BWI76_RS26365 0.70 -0.2 5,457,599 + +0.3 5,457,609 - +0.3 5,457,808 + -0.5 5,457,818 - +0.2 5,457,818 - +0.4 5,457,866 + -0.2 5,457,911 - +0.5 5,457,929 - -0.4 5,458,108 + BWI76_RS26370 0.18 +0.3 5,458,110 + BWI76_RS26370 0.18 -0.3 5,458,110 + BWI76_RS26370 0.18 +0.3 5,458,165 + BWI76_RS26370 0.23 +0.6 5,458,174 - BWI76_RS26370 0.23 +1.6 5,458,192 + BWI76_RS26370 0.25 +0.2 5,458,210 - BWI76_RS26370 0.26 -2.3 5,458,252 - -0.3 5,458,369 - BWI76_RS26370 0.39 -0.7 5,458,415 - BWI76_RS26370 0.43 +0.2 5,458,416 - BWI76_RS26370 0.43 -0.1 5,458,602 - BWI76_RS26370 0.58 +1.4 5,458,614 + BWI76_RS26370 0.59 -0.4 5,458,614 + BWI76_RS26370 0.59 -0.0 5,458,622 - BWI76_RS26370 0.59 +0.2
Or see this region's nucleotide sequence