Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01615 and BWI76_RS01620 are separated by 4 nucleotides BWI76_RS01620 and BWI76_RS01625 are separated by 142 nucleotides BWI76_RS01625 and BWI76_RS01630 are separated by 53 nucleotides
BWI76_RS01615: BWI76_RS01615 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 327,829 to 329,418
_RS01615
BWI76_RS01620: BWI76_RS01620 - hypothetical protein, at 329,423 to 329,650
_RS01620
BWI76_RS01625: BWI76_RS01625 - hypothetical protein, at 329,793 to 329,998
_RS01625
BWI76_RS01630: BWI76_RS01630 - 16S ribosomal RNA, at 330,052 to 331,605
_RS01630
Position (kb) 329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 328.543 kb on + strand, within BWI76_RS01615 at 328.608 kb on - strand, within BWI76_RS01615 at 328.639 kb on - strand, within BWI76_RS01615 at 328.689 kb on - strand, within BWI76_RS01615 at 328.739 kb on + strand, within BWI76_RS01615 at 328.775 kb on - strand, within BWI76_RS01615 at 328.858 kb on + strand, within BWI76_RS01615 at 328.896 kb on + strand, within BWI76_RS01615 at 328.999 kb on - strand, within BWI76_RS01615 at 329.130 kb on + strand, within BWI76_RS01615 at 329.218 kb on - strand, within BWI76_RS01615 at 329.306 kb on + strand at 329.312 kb on - strand at 329.368 kb on - strand at 329.428 kb on - strand at 329.594 kb on + strand, within BWI76_RS01620 at 329.594 kb on + strand, within BWI76_RS01620 at 329.600 kb on + strand, within BWI76_RS01620 at 329.605 kb on + strand, within BWI76_RS01620 at 330.515 kb on + strand, within BWI76_RS01630
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 328,543 + BWI76_RS01615 0.45 +0.9 328,608 - BWI76_RS01615 0.49 -0.6 328,639 - BWI76_RS01615 0.51 +0.1 328,689 - BWI76_RS01615 0.54 -2.0 328,739 + BWI76_RS01615 0.57 -0.6 328,775 - BWI76_RS01615 0.59 -0.5 328,858 + BWI76_RS01615 0.65 -0.4 328,896 + BWI76_RS01615 0.67 -0.6 328,999 - BWI76_RS01615 0.74 -1.6 329,130 + BWI76_RS01615 0.82 -0.6 329,218 - BWI76_RS01615 0.87 -1.7 329,306 + -1.3 329,312 - -0.2 329,368 - +0.3 329,428 - -1.4 329,594 + BWI76_RS01620 0.75 -0.3 329,594 + BWI76_RS01620 0.75 +0.4 329,600 + BWI76_RS01620 0.78 +1.2 329,605 + BWI76_RS01620 0.80 +1.3 330,515 + BWI76_RS01630 0.30 -0.3
Or see this region's nucleotide sequence