Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24060

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24055 and BWI76_RS24060 are separated by 75 nucleotidesBWI76_RS24060 and BWI76_RS24065 are separated by 94 nucleotidesBWI76_RS24065 and BWI76_RS24070 are separated by 90 nucleotides BWI76_RS24055: BWI76_RS24055 - MFS transporter, at 5,019,713 to 5,021,107 _RS24055 BWI76_RS24060: BWI76_RS24060 - SprT family protein, at 5,021,183 to 5,021,683 _RS24060 BWI76_RS24065: BWI76_RS24065 - deoxyribonuclease I, at 5,021,778 to 5,022,485 _RS24065 BWI76_RS24070: BWI76_RS24070 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 5,022,576 to 5,023,307 _RS24070 Position (kb) 5021 5022Strain fitness (log2 ratio) -1 0 1at 5020.376 kb on - strand, within BWI76_RS24055at 5020.410 kb on + strand, within BWI76_RS24055at 5020.674 kb on + strand, within BWI76_RS24055at 5020.764 kb on - strand, within BWI76_RS24055at 5020.807 kb on - strand, within BWI76_RS24055at 5021.081 kb on - strandat 5021.275 kb on + strand, within BWI76_RS24060at 5021.283 kb on - strand, within BWI76_RS24060at 5021.769 kb on + strandat 5021.875 kb on - strand, within BWI76_RS24065at 5022.161 kb on + strand, within BWI76_RS24065at 5022.161 kb on + strand, within BWI76_RS24065at 5022.393 kb on + strand, within BWI76_RS24065at 5022.448 kb on - strandat 5022.678 kb on + strand, within BWI76_RS24070at 5022.678 kb on + strand, within BWI76_RS24070

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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5,020,376 - BWI76_RS24055 0.48 -0.2
5,020,410 + BWI76_RS24055 0.50 -0.5
5,020,674 + BWI76_RS24055 0.69 -1.7
5,020,764 - BWI76_RS24055 0.75 +0.5
5,020,807 - BWI76_RS24055 0.78 -0.1
5,021,081 - -1.0
5,021,275 + BWI76_RS24060 0.18 -0.4
5,021,283 - BWI76_RS24060 0.20 -1.3
5,021,769 + +0.3
5,021,875 - BWI76_RS24065 0.14 +1.5
5,022,161 + BWI76_RS24065 0.54 +0.0
5,022,161 + BWI76_RS24065 0.54 -0.8
5,022,393 + BWI76_RS24065 0.87 -0.6
5,022,448 - -0.7
5,022,678 + BWI76_RS24070 0.14 +0.1
5,022,678 + BWI76_RS24070 0.14 +1.1

Or see this region's nucleotide sequence