Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02095 and BWI76_RS02100 are separated by 92 nucleotides BWI76_RS02100 and BWI76_RS02105 are separated by 67 nucleotides BWI76_RS02105 and BWI76_RS02110 are separated by 36 nucleotides BWI76_RS02110 and BWI76_RS02115 are separated by 203 nucleotides
BWI76_RS02095: BWI76_RS02095 - acetyl-coenzyme A synthetase, at 431,834 to 433,792
_RS02095
BWI76_RS02100: BWI76_RS02100 - hypothetical protein, at 433,885 to 434,136
_RS02100
BWI76_RS02105: BWI76_RS02105 - glutamate/aspartate:proton symporter GltP, at 434,204 to 435,517
_RS02105
BWI76_RS02110: BWI76_RS02110 - hypothetical protein, at 435,554 to 436,237
_RS02110
BWI76_RS02115: BWI76_RS02115 - formate dehydrogenase subunit alpha, at 436,441 to 438,588
_RS02115
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1
2 at 433.413 kb on + strand, within BWI76_RS02095 at 433.513 kb on - strand, within BWI76_RS02095 at 433.716 kb on + strand at 433.726 kb on + strand at 434.147 kb on + strand at 434.196 kb on + strand at 434.258 kb on - strand at 434.275 kb on - strand at 434.316 kb on + strand at 434.353 kb on - strand, within BWI76_RS02105 at 434.387 kb on + strand, within BWI76_RS02105 at 434.481 kb on + strand, within BWI76_RS02105 at 434.484 kb on - strand, within BWI76_RS02105 at 434.502 kb on + strand, within BWI76_RS02105 at 434.510 kb on - strand, within BWI76_RS02105 at 434.600 kb on + strand, within BWI76_RS02105 at 434.608 kb on - strand, within BWI76_RS02105 at 434.848 kb on + strand, within BWI76_RS02105 at 434.848 kb on + strand, within BWI76_RS02105 at 434.948 kb on + strand, within BWI76_RS02105 at 435.076 kb on + strand, within BWI76_RS02105 at 435.168 kb on - strand, within BWI76_RS02105 at 435.193 kb on + strand, within BWI76_RS02105 at 435.193 kb on + strand, within BWI76_RS02105 at 435.201 kb on - strand, within BWI76_RS02105 at 435.397 kb on - strand at 435.480 kb on + strand at 435.553 kb on - strand at 435.572 kb on + strand at 435.612 kb on - strand at 435.786 kb on + strand, within BWI76_RS02110 at 435.814 kb on - strand, within BWI76_RS02110 at 435.864 kb on - strand, within BWI76_RS02110 at 435.879 kb on + strand, within BWI76_RS02110 at 436.084 kb on - strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.130 kb on - strand, within BWI76_RS02110 at 436.130 kb on - strand, within BWI76_RS02110 at 436.130 kb on - strand, within BWI76_RS02110 at 436.267 kb on - strand at 436.269 kb on + strand at 436.269 kb on + strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.278 kb on - strand at 436.287 kb on - strand at 436.288 kb on - strand at 436.421 kb on + strand at 436.442 kb on - strand at 436.493 kb on + strand at 436.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 433,413 + BWI76_RS02095 0.81 +0.9 433,513 - BWI76_RS02095 0.86 +0.4 433,716 + +1.3 433,726 + -0.5 434,147 + +1.5 434,196 + -1.3 434,258 - +2.2 434,275 - +2.0 434,316 + -0.7 434,353 - BWI76_RS02105 0.11 -0.2 434,387 + BWI76_RS02105 0.14 -0.7 434,481 + BWI76_RS02105 0.21 -0.3 434,484 - BWI76_RS02105 0.21 -1.1 434,502 + BWI76_RS02105 0.23 -0.5 434,510 - BWI76_RS02105 0.23 -0.7 434,600 + BWI76_RS02105 0.30 -1.7 434,608 - BWI76_RS02105 0.31 +0.3 434,848 + BWI76_RS02105 0.49 -0.9 434,848 + BWI76_RS02105 0.49 -0.6 434,948 + BWI76_RS02105 0.57 -0.4 435,076 + BWI76_RS02105 0.66 -1.0 435,168 - BWI76_RS02105 0.73 -0.0 435,193 + BWI76_RS02105 0.75 -0.9 435,193 + BWI76_RS02105 0.75 +0.2 435,201 - BWI76_RS02105 0.76 -0.3 435,397 - -0.6 435,480 + -0.1 435,553 - -0.2 435,572 + -0.8 435,612 - +1.1 435,786 + BWI76_RS02110 0.34 -0.3 435,814 - BWI76_RS02110 0.38 -0.1 435,864 - BWI76_RS02110 0.45 +0.9 435,879 + BWI76_RS02110 0.48 +1.0 436,084 - BWI76_RS02110 0.77 -0.4 436,122 + BWI76_RS02110 0.83 +0.1 436,122 + BWI76_RS02110 0.83 -0.1 436,122 + BWI76_RS02110 0.83 -0.1 436,122 + BWI76_RS02110 0.83 +0.2 436,122 + BWI76_RS02110 0.83 -2.7 436,122 + BWI76_RS02110 0.83 -0.1 436,130 - BWI76_RS02110 0.84 -0.4 436,130 - BWI76_RS02110 0.84 -0.1 436,130 - BWI76_RS02110 0.84 +0.2 436,267 - +0.1 436,269 + -0.1 436,269 + -1.5 436,277 - +0.1 436,277 - -0.2 436,277 - -1.4 436,277 - +0.1 436,277 - -0.6 436,277 - -0.0 436,277 - -1.9 436,278 - +0.8 436,287 - +0.1 436,288 - +0.4 436,421 + -0.3 436,442 - -0.6 436,493 + +0.9 436,501 + -0.6
Or see this region's nucleotide sequence