Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08955

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08950 and BWI76_RS08955 are separated by 95 nucleotidesBWI76_RS08955 and BWI76_RS08960 overlap by 6 nucleotides BWI76_RS08950: BWI76_RS08950 - Asp/Glu/hydantoin racemase, at 1,885,943 to 1,886,557 _RS08950 BWI76_RS08955: BWI76_RS08955 - 23S rRNA (adenine(1618)-N(6))-methyltransferase, at 1,886,653 to 1,887,567 _RS08955 BWI76_RS08960: BWI76_RS08960 - mechanosensitive channel protein, at 1,887,562 to 1,889,772 _RS08960 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -1 0 1at 1885.862 kb on + strandat 1886.031 kb on - strand, within BWI76_RS08950at 1886.102 kb on - strand, within BWI76_RS08950at 1886.131 kb on - strand, within BWI76_RS08950at 1886.365 kb on + strand, within BWI76_RS08950at 1886.439 kb on + strand, within BWI76_RS08950at 1886.682 kb on + strandat 1886.710 kb on - strandat 1886.838 kb on + strand, within BWI76_RS08955at 1886.856 kb on - strand, within BWI76_RS08955at 1887.157 kb on - strand, within BWI76_RS08955at 1887.196 kb on + strand, within BWI76_RS08955at 1887.209 kb on - strand, within BWI76_RS08955at 1887.274 kb on - strand, within BWI76_RS08955at 1887.274 kb on - strand, within BWI76_RS08955at 1887.274 kb on - strand, within BWI76_RS08955at 1887.446 kb on - strand, within BWI76_RS08955at 1888.058 kb on + strand, within BWI76_RS08960at 1888.343 kb on - strand, within BWI76_RS08960at 1888.343 kb on - strand, within BWI76_RS08960

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,885,862 + -0.2
1,886,031 - BWI76_RS08950 0.14 +0.4
1,886,102 - BWI76_RS08950 0.26 -0.3
1,886,131 - BWI76_RS08950 0.31 -0.9
1,886,365 + BWI76_RS08950 0.69 +0.2
1,886,439 + BWI76_RS08950 0.81 +0.4
1,886,682 + +0.1
1,886,710 - -0.6
1,886,838 + BWI76_RS08955 0.20 -0.2
1,886,856 - BWI76_RS08955 0.22 -0.2
1,887,157 - BWI76_RS08955 0.55 +0.3
1,887,196 + BWI76_RS08955 0.59 +0.6
1,887,209 - BWI76_RS08955 0.61 +0.5
1,887,274 - BWI76_RS08955 0.68 +0.3
1,887,274 - BWI76_RS08955 0.68 +0.8
1,887,274 - BWI76_RS08955 0.68 -0.3
1,887,446 - BWI76_RS08955 0.87 +0.4
1,888,058 + BWI76_RS08960 0.22 -0.3
1,888,343 - BWI76_RS08960 0.35 -0.3
1,888,343 - BWI76_RS08960 0.35 -0.1

Or see this region's nucleotide sequence