Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05860 and BWI76_RS05865 are separated by 222 nucleotides BWI76_RS05865 and BWI76_RS05870 overlap by 4 nucleotides BWI76_RS05870 and BWI76_RS05875 are separated by 23 nucleotides
BWI76_RS05860: BWI76_RS05860 - alkanesulfonates-binding protein, at 1,230,772 to 1,231,839
_RS05860
BWI76_RS05865: BWI76_RS05865 - ABC transporter permease, at 1,232,062 to 1,233,630
_RS05865
BWI76_RS05870: BWI76_RS05870 - ABC transporter, at 1,233,627 to 1,234,370
_RS05870
BWI76_RS05875: BWI76_RS05875 - hypothetical protein, at 1,234,394 to 1,236,181
_RS05875
Position (kb) 1232
1233
1234 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1231.329 kb on + strand, within BWI76_RS05860 at 1231.517 kb on + strand, within BWI76_RS05860 at 1231.632 kb on + strand, within BWI76_RS05860 at 1232.345 kb on + strand, within BWI76_RS05865 at 1232.624 kb on + strand, within BWI76_RS05865 at 1232.639 kb on + strand, within BWI76_RS05865 at 1232.655 kb on + strand, within BWI76_RS05865 at 1232.785 kb on - strand, within BWI76_RS05865 at 1232.964 kb on + strand, within BWI76_RS05865 at 1233.062 kb on - strand, within BWI76_RS05865 at 1233.101 kb on - strand, within BWI76_RS05865 at 1233.143 kb on + strand, within BWI76_RS05865 at 1233.417 kb on + strand, within BWI76_RS05865 at 1233.562 kb on + strand at 1233.574 kb on + strand at 1233.575 kb on - strand at 1233.624 kb on + strand at 1233.624 kb on + strand at 1233.642 kb on - strand at 1233.680 kb on + strand at 1233.707 kb on + strand, within BWI76_RS05870 at 1233.760 kb on + strand, within BWI76_RS05870 at 1234.282 kb on + strand, within BWI76_RS05870 at 1234.295 kb on - strand, within BWI76_RS05870 at 1234.458 kb on + strand at 1234.493 kb on + strand at 1234.530 kb on + strand at 1234.586 kb on - strand, within BWI76_RS05875
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,231,329 + BWI76_RS05860 0.52 -0.2 1,231,517 + BWI76_RS05860 0.70 -0.0 1,231,632 + BWI76_RS05860 0.81 +0.1 1,232,345 + BWI76_RS05865 0.18 +0.4 1,232,624 + BWI76_RS05865 0.36 +0.1 1,232,639 + BWI76_RS05865 0.37 +0.3 1,232,655 + BWI76_RS05865 0.38 -0.6 1,232,785 - BWI76_RS05865 0.46 +4.4 1,232,964 + BWI76_RS05865 0.57 +0.7 1,233,062 - BWI76_RS05865 0.64 +0.7 1,233,101 - BWI76_RS05865 0.66 +0.6 1,233,143 + BWI76_RS05865 0.69 +0.2 1,233,417 + BWI76_RS05865 0.86 -0.0 1,233,562 + -0.4 1,233,574 + -0.3 1,233,575 - -0.1 1,233,624 + -0.2 1,233,624 + +0.3 1,233,642 - +0.2 1,233,680 + -0.5 1,233,707 + BWI76_RS05870 0.11 -0.2 1,233,760 + BWI76_RS05870 0.18 -0.1 1,234,282 + BWI76_RS05870 0.88 -0.3 1,234,295 - BWI76_RS05870 0.90 -0.1 1,234,458 + +1.0 1,234,493 + +0.1 1,234,530 + -0.7 1,234,586 - BWI76_RS05875 0.11 -0.1
Or see this region's nucleotide sequence