Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05130

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05125 and BWI76_RS05130 are separated by 45 nucleotidesBWI76_RS05130 and BWI76_RS05135 overlap by 1 nucleotidesBWI76_RS05135 and BWI76_RS05140 overlap by 4 nucleotides BWI76_RS05125: BWI76_RS05125 - ferrichrome porin FhuA, at 1,076,135 to 1,078,339 _RS05125 BWI76_RS05130: BWI76_RS05130 - iron-hydroxamate transporter ATP-binding subunit, at 1,078,385 to 1,079,182 _RS05130 BWI76_RS05135: BWI76_RS05135 - iron-hydroxamate transporter substrate-binding subunit, at 1,079,182 to 1,080,072 _RS05135 BWI76_RS05140: BWI76_RS05140 - Fe3+-hydroxamate ABC transporter permease FhuB, at 1,080,069 to 1,082,051 _RS05140 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1at 1077.420 kb on + strand, within BWI76_RS05125at 1077.651 kb on + strand, within BWI76_RS05125at 1077.851 kb on - strand, within BWI76_RS05125at 1078.022 kb on + strand, within BWI76_RS05125at 1078.533 kb on + strand, within BWI76_RS05130at 1078.686 kb on - strand, within BWI76_RS05130at 1078.786 kb on + strand, within BWI76_RS05130at 1078.794 kb on - strand, within BWI76_RS05130at 1078.876 kb on + strand, within BWI76_RS05130at 1078.977 kb on + strand, within BWI76_RS05130at 1079.052 kb on + strand, within BWI76_RS05130at 1079.425 kb on + strand, within BWI76_RS05135at 1079.502 kb on - strand, within BWI76_RS05135

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,077,420 + BWI76_RS05125 0.58 -0.5
1,077,651 + BWI76_RS05125 0.69 -0.7
1,077,851 - BWI76_RS05125 0.78 -0.8
1,078,022 + BWI76_RS05125 0.86 -0.5
1,078,533 + BWI76_RS05130 0.19 -1.2
1,078,686 - BWI76_RS05130 0.38 -0.6
1,078,786 + BWI76_RS05130 0.50 -2.7
1,078,794 - BWI76_RS05130 0.51 -0.6
1,078,876 + BWI76_RS05130 0.62 -0.4
1,078,977 + BWI76_RS05130 0.74 -0.7
1,079,052 + BWI76_RS05130 0.84 -1.7
1,079,425 + BWI76_RS05135 0.27 -0.7
1,079,502 - BWI76_RS05135 0.36 -1.1

Or see this region's nucleotide sequence