Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03150 and BWI76_RS03155 are separated by 126 nucleotides BWI76_RS03155 and BWI76_RS03160 are separated by 463 nucleotides
BWI76_RS03150: BWI76_RS03150 - site-specific recombinase, phage integrase family protein, at 648,675 to 649,937
_RS03150
BWI76_RS03155: BWI76_RS03155 - hypothetical protein, at 650,064 to 650,966
_RS03155
BWI76_RS03160: BWI76_RS03160 - hypothetical protein, at 651,430 to 653,463
_RS03160
Position (kb) 650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 649.097 kb on + strand, within BWI76_RS03150 at 649.097 kb on + strand, within BWI76_RS03150 at 649.097 kb on + strand, within BWI76_RS03150 at 649.112 kb on + strand, within BWI76_RS03150 at 649.151 kb on + strand, within BWI76_RS03150 at 649.159 kb on - strand, within BWI76_RS03150 at 649.206 kb on + strand, within BWI76_RS03150 at 649.214 kb on - strand, within BWI76_RS03150 at 649.225 kb on + strand, within BWI76_RS03150 at 649.225 kb on + strand, within BWI76_RS03150 at 649.233 kb on - strand, within BWI76_RS03150 at 649.233 kb on - strand, within BWI76_RS03150 at 649.248 kb on - strand, within BWI76_RS03150 at 649.277 kb on + strand, within BWI76_RS03150 at 649.287 kb on + strand, within BWI76_RS03150 at 649.295 kb on - strand, within BWI76_RS03150 at 649.329 kb on + strand, within BWI76_RS03150 at 649.363 kb on + strand, within BWI76_RS03150 at 649.371 kb on - strand, within BWI76_RS03150 at 649.489 kb on - strand, within BWI76_RS03150 at 649.500 kb on - strand, within BWI76_RS03150 at 649.500 kb on - strand, within BWI76_RS03150 at 649.519 kb on - strand, within BWI76_RS03150 at 649.523 kb on + strand, within BWI76_RS03150 at 649.577 kb on + strand, within BWI76_RS03150 at 649.585 kb on - strand, within BWI76_RS03150 at 649.585 kb on - strand, within BWI76_RS03150 at 649.619 kb on - strand, within BWI76_RS03150 at 649.691 kb on + strand, within BWI76_RS03150 at 649.704 kb on + strand, within BWI76_RS03150 at 649.706 kb on + strand, within BWI76_RS03150 at 649.706 kb on + strand, within BWI76_RS03150 at 649.711 kb on + strand, within BWI76_RS03150 at 649.714 kb on - strand, within BWI76_RS03150 at 649.714 kb on - strand, within BWI76_RS03150 at 649.723 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.746 kb on - strand, within BWI76_RS03150 at 649.748 kb on + strand, within BWI76_RS03150 at 649.751 kb on - strand, within BWI76_RS03150 at 649.751 kb on - strand, within BWI76_RS03150 at 649.751 kb on - strand at 649.783 kb on + strand, within BWI76_RS03150 at 649.783 kb on + strand, within BWI76_RS03150 at 649.798 kb on - strand, within BWI76_RS03150 at 649.853 kb on - strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.855 kb on - strand at 649.855 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.867 kb on - strand at 649.867 kb on - strand at 649.867 kb on - strand at 649.873 kb on + strand at 649.881 kb on - strand at 649.888 kb on + strand at 649.903 kb on - strand at 649.905 kb on + strand at 649.905 kb on + strand at 649.905 kb on + strand at 649.905 kb on - strand at 649.905 kb on - strand at 649.906 kb on - strand at 649.906 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.973 kb on + strand at 649.973 kb on + strand at 649.973 kb on + strand at 649.983 kb on + strand at 649.983 kb on + strand at 649.991 kb on - strand at 650.061 kb on - strand at 650.117 kb on - strand at 650.121 kb on + strand at 650.132 kb on + strand at 650.132 kb on + strand at 650.140 kb on - strand at 650.163 kb on + strand, within BWI76_RS03155 at 650.190 kb on + strand at 650.190 kb on + strand, within BWI76_RS03155 at 650.190 kb on + strand at 650.194 kb on + strand, within BWI76_RS03155 at 650.198 kb on + strand, within BWI76_RS03155 at 650.198 kb on + strand, within BWI76_RS03155 at 650.198 kb on - strand, within BWI76_RS03155 at 650.200 kb on + strand, within BWI76_RS03155 at 650.208 kb on - strand, within BWI76_RS03155 at 650.209 kb on - strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.221 kb on + strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.223 kb on - strand, within BWI76_RS03155 at 650.228 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.249 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.259 kb on + strand, within BWI76_RS03155 at 650.262 kb on - strand, within BWI76_RS03155 at 650.264 kb on - strand, within BWI76_RS03155 at 650.289 kb on - strand, within BWI76_RS03155 at 650.289 kb on - strand, within BWI76_RS03155 at 650.541 kb on + strand at 650.541 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.549 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.557 kb on + strand, within BWI76_RS03155 at 650.560 kb on - strand, within BWI76_RS03155 at 650.565 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.877 kb on + strand at 650.939 kb on + strand at 650.946 kb on - strand at 651.045 kb on - strand at 651.088 kb on + strand at 651.088 kb on + strand at 651.088 kb on + strand at 651.096 kb on - strand at 651.135 kb on + strand at 651.135 kb on + strand at 651.135 kb on + strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.181 kb on + strand at 651.181 kb on + strand at 651.181 kb on + strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.193 kb on + strand at 651.201 kb on - strand at 651.215 kb on + strand at 651.215 kb on + strand at 651.215 kb on + strand at 651.278 kb on + strand at 651.287 kb on - strand at 651.292 kb on + strand at 651.300 kb on + strand at 651.300 kb on - strand at 651.300 kb on - strand at 651.319 kb on + strand at 651.415 kb on + strand at 651.438 kb on + strand at 651.446 kb on - strand at 651.446 kb on - strand at 651.483 kb on + strand at 651.484 kb on - strand at 651.491 kb on + strand at 651.498 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.610 kb on + strand at 651.755 kb on - strand, within BWI76_RS03160 at 651.844 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.855 kb on + strand, within BWI76_RS03160 at 651.855 kb on + strand, within BWI76_RS03160 at 651.863 kb on - strand, within BWI76_RS03160
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 649,097 + BWI76_RS03150 0.33 -0.2 649,097 + BWI76_RS03150 0.33 -0.5 649,097 + BWI76_RS03150 0.33 +1.6 649,112 + BWI76_RS03150 0.35 +0.2 649,151 + BWI76_RS03150 0.38 +0.2 649,159 - BWI76_RS03150 0.38 +0.3 649,206 + BWI76_RS03150 0.42 -0.6 649,214 - BWI76_RS03150 0.43 +0.1 649,225 + BWI76_RS03150 0.44 +0.5 649,225 + BWI76_RS03150 0.44 -0.2 649,233 - BWI76_RS03150 0.44 -0.3 649,233 - BWI76_RS03150 0.44 +1.4 649,248 - BWI76_RS03150 0.45 +0.2 649,277 + BWI76_RS03150 0.48 -1.7 649,287 + BWI76_RS03150 0.48 -0.9 649,295 - BWI76_RS03150 0.49 -0.2 649,329 + BWI76_RS03150 0.52 -0.5 649,363 + BWI76_RS03150 0.54 -0.4 649,371 - BWI76_RS03150 0.55 -0.1 649,489 - BWI76_RS03150 0.64 +0.2 649,500 - BWI76_RS03150 0.65 +0.1 649,500 - BWI76_RS03150 0.65 +0.5 649,519 - BWI76_RS03150 0.67 +1.1 649,523 + BWI76_RS03150 0.67 -1.0 649,577 + BWI76_RS03150 0.71 -0.6 649,585 - BWI76_RS03150 0.72 -0.1 649,585 - BWI76_RS03150 0.72 +0.1 649,619 - BWI76_RS03150 0.75 +0.3 649,691 + BWI76_RS03150 0.80 -0.0 649,704 + BWI76_RS03150 0.81 +0.4 649,706 + BWI76_RS03150 0.82 +0.3 649,706 + BWI76_RS03150 0.82 +0.6 649,711 + BWI76_RS03150 0.82 -1.0 649,714 - BWI76_RS03150 0.82 +0.4 649,714 - BWI76_RS03150 0.82 +0.1 649,723 + BWI76_RS03150 0.83 +0.1 649,743 + BWI76_RS03150 0.85 -0.7 649,743 + BWI76_RS03150 0.85 -1.6 649,743 + BWI76_RS03150 0.85 -0.6 649,746 - BWI76_RS03150 0.85 -0.9 649,748 + BWI76_RS03150 0.85 +1.3 649,751 - BWI76_RS03150 0.85 -0.7 649,751 - BWI76_RS03150 0.85 +0.0 649,751 - +0.6 649,783 + BWI76_RS03150 0.88 +0.5 649,783 + BWI76_RS03150 0.88 -0.2 649,798 - BWI76_RS03150 0.89 +0.6 649,853 - +0.4 649,854 + -0.8 649,854 + -0.4 649,854 + +0.3 649,854 + -0.4 649,854 + -1.3 649,854 + -0.3 649,854 + -0.3 649,854 + -0.4 649,854 + +0.9 649,854 + +0.0 649,854 + -0.5 649,854 + -0.7 649,854 + -0.2 649,855 - -0.8 649,855 - +1.9 649,862 - +2.3 649,862 - +1.9 649,862 - +0.4 649,862 - -0.9 649,862 - +0.4 649,862 - +2.9 649,862 - -1.0 649,862 - +0.3 649,862 - +0.6 649,862 - +0.3 649,862 - -0.1 649,867 - +0.9 649,867 - -0.2 649,867 - -0.4 649,873 + -0.5 649,881 - -0.2 649,888 + -0.8 649,903 - -0.1 649,905 + +1.3 649,905 + -0.2 649,905 + -0.5 649,905 - +0.5 649,905 - +1.3 649,906 - -0.7 649,906 - +0.1 649,913 - +0.5 649,913 - -0.6 649,913 - -1.5 649,913 - +0.4 649,913 - +0.5 649,973 + -0.4 649,973 + -0.2 649,973 + +1.2 649,983 + -0.9 649,983 + +0.6 649,991 - +0.5 650,061 - -1.5 650,117 - -0.8 650,121 + -1.4 650,132 + -0.4 650,132 + +1.1 650,140 - -1.1 650,163 + BWI76_RS03155 0.11 -3.1 650,190 + +0.3 650,190 + BWI76_RS03155 0.14 -2.1 650,190 + -0.4 650,194 + BWI76_RS03155 0.14 -1.4 650,198 + BWI76_RS03155 0.15 -1.5 650,198 + BWI76_RS03155 0.15 -3.3 650,198 - BWI76_RS03155 0.15 -1.5 650,200 + BWI76_RS03155 0.15 +0.6 650,208 - BWI76_RS03155 0.16 -0.9 650,209 - BWI76_RS03155 0.16 -0.7 650,213 + BWI76_RS03155 0.17 -0.3 650,213 + BWI76_RS03155 0.17 -1.2 650,213 + BWI76_RS03155 0.17 -0.9 650,215 + BWI76_RS03155 0.17 +0.9 650,215 + BWI76_RS03155 0.17 +0.6 650,215 + BWI76_RS03155 0.17 +0.3 650,221 + BWI76_RS03155 0.17 -3.1 650,221 - BWI76_RS03155 0.17 -1.1 650,221 - BWI76_RS03155 0.17 -0.5 650,221 - BWI76_RS03155 0.17 -0.9 650,221 - BWI76_RS03155 0.17 -1.4 650,223 - BWI76_RS03155 0.18 -1.5 650,228 + BWI76_RS03155 0.18 -1.2 650,236 + BWI76_RS03155 0.19 +0.3 650,236 + BWI76_RS03155 0.19 -1.0 650,236 + BWI76_RS03155 0.19 -0.2 650,236 + BWI76_RS03155 0.19 -2.0 650,236 + BWI76_RS03155 0.19 -0.9 650,244 - BWI76_RS03155 0.20 +1.9 650,244 - BWI76_RS03155 0.20 +0.5 650,244 - BWI76_RS03155 0.20 -0.7 650,244 - BWI76_RS03155 0.20 -1.1 650,244 - BWI76_RS03155 0.20 -0.5 650,246 + BWI76_RS03155 0.20 -0.9 650,246 + +0.9 650,246 + BWI76_RS03155 0.20 -1.2 650,246 + BWI76_RS03155 0.20 -2.8 650,246 + BWI76_RS03155 0.20 -0.8 650,246 + BWI76_RS03155 0.20 -1.9 650,246 + BWI76_RS03155 0.20 -2.1 650,246 + BWI76_RS03155 0.20 -0.5 650,249 - BWI76_RS03155 0.20 -0.5 650,254 - BWI76_RS03155 0.21 -1.6 650,254 - BWI76_RS03155 0.21 -1.2 650,254 - BWI76_RS03155 0.21 -1.5 650,254 - BWI76_RS03155 0.21 -0.8 650,254 - BWI76_RS03155 0.21 -0.5 650,254 - BWI76_RS03155 0.21 -1.6 650,254 - BWI76_RS03155 0.21 -1.3 650,254 - BWI76_RS03155 0.21 -1.1 650,254 - BWI76_RS03155 0.21 -0.4 650,259 + BWI76_RS03155 0.22 +0.8 650,262 - BWI76_RS03155 0.22 -0.6 650,264 - BWI76_RS03155 0.22 -1.3 650,289 - BWI76_RS03155 0.25 -2.2 650,289 - BWI76_RS03155 0.25 -0.8 650,541 + +0.9 650,541 + BWI76_RS03155 0.53 -1.1 650,542 + BWI76_RS03155 0.53 -1.4 650,542 + BWI76_RS03155 0.53 -0.7 650,549 - BWI76_RS03155 0.54 +1.6 650,550 - BWI76_RS03155 0.54 -1.8 650,550 - BWI76_RS03155 0.54 -2.0 650,557 + BWI76_RS03155 0.55 -1.3 650,560 - BWI76_RS03155 0.55 -1.2 650,565 - BWI76_RS03155 0.55 -1.3 650,807 - BWI76_RS03155 0.82 -1.3 650,807 - BWI76_RS03155 0.82 -1.4 650,877 + -0.1 650,939 + -2.2 650,946 - -0.9 651,045 - +0.6 651,088 + -1.9 651,088 + -0.4 651,088 + +1.0 651,096 - -1.1 651,135 + +0.9 651,135 + -0.6 651,135 + +0.9 651,143 - -1.9 651,143 - -0.0 651,143 - -0.7 651,143 - -1.5 651,181 + -0.1 651,181 + -1.7 651,181 + -1.0 651,189 - -1.1 651,189 - -1.0 651,189 - -1.0 651,189 - -0.2 651,193 + -1.6 651,201 - +0.5 651,215 + -0.8 651,215 + -0.3 651,215 + -0.1 651,278 + -1.8 651,287 - +3.9 651,292 + -0.1 651,300 + -1.9 651,300 - -1.7 651,300 - -1.5 651,319 + -1.4 651,415 + -0.5 651,438 + -0.5 651,446 - -1.4 651,446 - -0.7 651,483 + -0.2 651,484 - +1.6 651,491 + -0.5 651,498 + +0.2 651,552 + +0.2 651,552 + -1.8 651,552 + -0.2 651,552 + -1.6 651,552 + -1.6 651,552 + -0.9 651,552 + -1.3 651,560 - -2.1 651,560 - -0.1 651,560 - -0.8 651,560 - -1.9 651,560 - -0.7 651,560 - +0.9 651,610 + -1.1 651,755 - BWI76_RS03160 0.16 -0.2 651,844 + BWI76_RS03160 0.20 -0.8 651,845 + BWI76_RS03160 0.20 -1.5 651,845 + BWI76_RS03160 0.20 -0.7 651,845 + BWI76_RS03160 0.20 -0.9 651,845 + BWI76_RS03160 0.20 -0.6 651,845 + BWI76_RS03160 0.20 -0.2 651,845 + BWI76_RS03160 0.20 -0.8 651,845 + BWI76_RS03160 0.20 -2.0 651,845 + BWI76_RS03160 0.20 +0.5 651,845 + BWI76_RS03160 0.20 -1.0 651,845 + BWI76_RS03160 0.20 +0.1 651,845 + BWI76_RS03160 0.20 -1.3 651,853 - BWI76_RS03160 0.21 -1.7 651,853 - BWI76_RS03160 0.21 -1.7 651,853 - BWI76_RS03160 0.21 -1.4 651,853 - BWI76_RS03160 0.21 -0.8 651,853 - BWI76_RS03160 0.21 -0.8 651,853 - BWI76_RS03160 0.21 -1.0 651,855 + BWI76_RS03160 0.21 +0.5 651,855 + BWI76_RS03160 0.21 -1.9 651,863 - BWI76_RS03160 0.21 +0.1
Or see this region's nucleotide sequence