Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02855

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02850 and BWI76_RS02855 are separated by 36 nucleotidesBWI76_RS02855 and BWI76_RS02860 are separated by 419 nucleotidesBWI76_RS02860 and BWI76_RS02865 are separated by 11 nucleotides BWI76_RS02850: BWI76_RS02850 - metalloprotease PmbA, at 583,827 to 585,179 _RS02850 BWI76_RS02855: BWI76_RS02855 - cytochrome B562, at 585,216 to 585,602 _RS02855 BWI76_RS02860: BWI76_RS02860 - glycine dehydrogenase, at 586,022 to 586,360 _RS02860 BWI76_RS02865: BWI76_RS02865 - hypothetical protein, at 586,372 to 586,734 _RS02865 Position (kb) 585 586Strain fitness (log2 ratio) -2 -1 0 1 2at 584.441 kb on + strand, within BWI76_RS02850at 584.449 kb on - strand, within BWI76_RS02850at 584.509 kb on + strand, within BWI76_RS02850at 584.516 kb on - strand, within BWI76_RS02850at 584.800 kb on + strand, within BWI76_RS02850at 584.808 kb on - strand, within BWI76_RS02850at 585.139 kb on + strandat 585.305 kb on - strand, within BWI76_RS02855at 585.328 kb on - strand, within BWI76_RS02855at 585.480 kb on - strand, within BWI76_RS02855at 585.568 kb on - strandat 585.981 kb on + strandat 585.981 kb on + strandat 586.011 kb on - strandat 586.055 kb on - strandat 586.112 kb on + strand, within BWI76_RS02860at 586.296 kb on - strand, within BWI76_RS02860at 586.357 kb on + strandat 586.410 kb on - strand, within BWI76_RS02865at 586.553 kb on + strand, within BWI76_RS02865at 586.553 kb on + strand, within BWI76_RS02865at 586.560 kb on + strand, within BWI76_RS02865at 586.566 kb on - strand, within BWI76_RS02865

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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584,441 + BWI76_RS02850 0.45 +0.1
584,449 - BWI76_RS02850 0.46 -0.4
584,509 + BWI76_RS02850 0.50 +1.3
584,516 - BWI76_RS02850 0.51 +0.3
584,800 + BWI76_RS02850 0.72 -0.4
584,808 - BWI76_RS02850 0.73 -0.3
585,139 + +0.2
585,305 - BWI76_RS02855 0.23 +2.2
585,328 - BWI76_RS02855 0.29 +0.4
585,480 - BWI76_RS02855 0.68 +0.5
585,568 - -1.0
585,981 + +0.1
585,981 + -0.1
586,011 - +0.0
586,055 - +0.5
586,112 + BWI76_RS02860 0.27 +0.9
586,296 - BWI76_RS02860 0.81 +0.2
586,357 + -0.3
586,410 - BWI76_RS02865 0.10 -0.2
586,553 + BWI76_RS02865 0.50 -0.3
586,553 + BWI76_RS02865 0.50 +0.1
586,560 + BWI76_RS02865 0.52 -2.3
586,566 - BWI76_RS02865 0.53 +0.7

Or see this region's nucleotide sequence