Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04150 and BWI76_RS04155 are separated by 10 nucleotides BWI76_RS04155 and BWI76_RS04160 are separated by 104 nucleotides BWI76_RS04160 and BWI76_RS04165 are separated by 9 nucleotides
BWI76_RS04150: BWI76_RS04150 - lipoate--protein ligase A, at 853,899 to 854,915
_RS04150
BWI76_RS04155: BWI76_RS04155 - membrane protein, at 854,926 to 855,567
_RS04155
BWI76_RS04160: BWI76_RS04160 - phosphoserine phosphatase, at 855,672 to 856,643
_RS04160
BWI76_RS04165: BWI76_RS04165 - DNA repair protein RadA, at 856,653 to 858,035
_RS04165
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 854.972 kb on - strand at 855.070 kb on + strand, within BWI76_RS04155 at 855.251 kb on - strand, within BWI76_RS04155 at 855.251 kb on - strand, within BWI76_RS04155 at 855.486 kb on + strand, within BWI76_RS04155 at 855.504 kb on - strand at 855.512 kb on - strand at 855.522 kb on - strand at 855.691 kb on + strand at 855.726 kb on + strand at 855.797 kb on + strand, within BWI76_RS04160 at 855.866 kb on - strand, within BWI76_RS04160 at 855.919 kb on + strand, within BWI76_RS04160 at 855.927 kb on - strand, within BWI76_RS04160 at 856.200 kb on - strand, within BWI76_RS04160 at 856.310 kb on + strand, within BWI76_RS04160 at 856.331 kb on - strand, within BWI76_RS04160 at 856.571 kb on + strand at 856.593 kb on + strand at 856.598 kb on + strand at 856.603 kb on - strand at 856.606 kb on - strand at 856.617 kb on + strand at 856.695 kb on + strand at 857.087 kb on - strand, within BWI76_RS04165 at 857.376 kb on - strand, within BWI76_RS04165 at 857.473 kb on + strand, within BWI76_RS04165
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 854,972 - -0.1 855,070 + BWI76_RS04155 0.22 -0.3 855,251 - BWI76_RS04155 0.51 -0.5 855,251 - BWI76_RS04155 0.51 +0.0 855,486 + BWI76_RS04155 0.87 -0.1 855,504 - -0.5 855,512 - +0.3 855,522 - +0.9 855,691 + -2.1 855,726 + -1.0 855,797 + BWI76_RS04160 0.13 -1.7 855,866 - BWI76_RS04160 0.20 -1.2 855,919 + BWI76_RS04160 0.25 -1.4 855,927 - BWI76_RS04160 0.26 -2.0 856,200 - BWI76_RS04160 0.54 -1.3 856,310 + BWI76_RS04160 0.66 -0.7 856,331 - BWI76_RS04160 0.68 -0.6 856,571 + -0.9 856,593 + -1.6 856,598 + +2.5 856,603 - -1.7 856,606 - -1.6 856,617 + -0.4 856,695 + +0.5 857,087 - BWI76_RS04165 0.31 +0.1 857,376 - BWI76_RS04165 0.52 +0.4 857,473 + BWI76_RS04165 0.59 -1.3
Or see this region's nucleotide sequence