Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15835

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15830 and BWI76_RS15835 are separated by 7 nucleotidesBWI76_RS15835 and BWI76_RS15840 are separated by 151 nucleotidesBWI76_RS15840 and BWI76_RS15845 overlap by 17 nucleotides BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666 _RS15830 BWI76_RS15835: BWI76_RS15835 - hypothetical protein, at 3,291,674 to 3,291,871 _RS15835 BWI76_RS15840: BWI76_RS15840 - prophage protein, at 3,292,023 to 3,292,805 _RS15840 BWI76_RS15845: BWI76_RS15845 - hypothetical protein, at 3,292,789 to 3,293,079 _RS15845 Position (kb) 3291 3292Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3290.743 kb on + strandat 3290.827 kb on + strand, within BWI76_RS15830at 3290.862 kb on - strand, within BWI76_RS15830at 3290.869 kb on + strand, within BWI76_RS15830at 3290.869 kb on + strand, within BWI76_RS15830at 3290.877 kb on - strand, within BWI76_RS15830at 3290.889 kb on + strand, within BWI76_RS15830at 3291.006 kb on + strand, within BWI76_RS15830at 3291.068 kb on - strand, within BWI76_RS15830at 3291.241 kb on + strand, within BWI76_RS15830at 3291.274 kb on - strand, within BWI76_RS15830at 3291.377 kb on - strand, within BWI76_RS15830at 3291.400 kb on + strand, within BWI76_RS15830at 3291.535 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830at 3291.589 kb on - strandat 3291.708 kb on - strand, within BWI76_RS15835at 3291.716 kb on - strand, within BWI76_RS15835at 3291.801 kb on + strand, within BWI76_RS15835at 3291.830 kb on + strand, within BWI76_RS15835at 3292.119 kb on + strand, within BWI76_RS15840at 3292.119 kb on + strand, within BWI76_RS15840at 3292.126 kb on - strand, within BWI76_RS15840at 3292.127 kb on - strand, within BWI76_RS15840at 3292.295 kb on + strand, within BWI76_RS15840at 3292.349 kb on + strand, within BWI76_RS15840at 3292.349 kb on - strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.674 kb on - strand, within BWI76_RS15840at 3292.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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3,290,743 + -7.3
3,290,827 + BWI76_RS15830 0.16 -6.9
3,290,862 - BWI76_RS15830 0.20 -0.3
3,290,869 + BWI76_RS15830 0.21 -7.8
3,290,869 + BWI76_RS15830 0.21 -7.1
3,290,877 - BWI76_RS15830 0.21 -0.7
3,290,889 + BWI76_RS15830 0.23 -5.6
3,291,006 + BWI76_RS15830 0.34 -4.3
3,291,068 - BWI76_RS15830 0.40 +0.0
3,291,241 + BWI76_RS15830 0.58 -5.3
3,291,274 - BWI76_RS15830 0.61 +0.1
3,291,377 - BWI76_RS15830 0.71 -0.1
3,291,400 + BWI76_RS15830 0.73 -5.1
3,291,535 - BWI76_RS15830 0.87 -1.0
3,291,559 - BWI76_RS15830 0.89 -0.5
3,291,559 - BWI76_RS15830 0.89 +0.5
3,291,589 - -1.2
3,291,708 - BWI76_RS15835 0.17 +0.3
3,291,716 - BWI76_RS15835 0.21 +0.2
3,291,801 + BWI76_RS15835 0.64 -3.5
3,291,830 + BWI76_RS15835 0.79 -5.8
3,292,119 + BWI76_RS15840 0.12 -8.5
3,292,119 + BWI76_RS15840 0.12 -7.7
3,292,126 - BWI76_RS15840 0.13 -1.0
3,292,127 - BWI76_RS15840 0.13 +0.1
3,292,295 + BWI76_RS15840 0.35 -8.5
3,292,349 + BWI76_RS15840 0.42 -7.0
3,292,349 - BWI76_RS15840 0.42 +0.1
3,292,520 + BWI76_RS15840 0.63 -5.8
3,292,520 + BWI76_RS15840 0.63 -8.0
3,292,520 + BWI76_RS15840 0.63 -2.9
3,292,528 - BWI76_RS15840 0.64 +0.1
3,292,528 - BWI76_RS15840 0.64 -0.5
3,292,674 - BWI76_RS15840 0.83 -0.1
3,292,787 - +0.4

Or see this region's nucleotide sequence