Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27120 and BWI76_RS27125 are separated by 254 nucleotides BWI76_RS27125 and BWI76_RS27130 are separated by 10 nucleotides
BWI76_RS27120: BWI76_RS27120 - AraC family transcriptional regulator, at 5,627,405 to 5,628,208
_RS27120
BWI76_RS27125: BWI76_RS27125 - sugar (glycoside-Pentoside-Hexuronide) transporter, at 5,628,463 to 5,629,863
_RS27125
BWI76_RS27130: BWI76_RS27130 - hypothetical protein, at 5,629,874 to 5,631,835
_RS27130
Position (kb) 5628
5629
5630 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5627.579 kb on - strand, within BWI76_RS27120 at 5627.596 kb on - strand, within BWI76_RS27120 at 5627.657 kb on - strand, within BWI76_RS27120 at 5627.670 kb on - strand, within BWI76_RS27120 at 5627.682 kb on - strand, within BWI76_RS27120 at 5627.704 kb on + strand, within BWI76_RS27120 at 5627.722 kb on - strand, within BWI76_RS27120 at 5627.727 kb on + strand, within BWI76_RS27120 at 5627.727 kb on + strand, within BWI76_RS27120 at 5627.735 kb on - strand, within BWI76_RS27120 at 5627.735 kb on - strand, within BWI76_RS27120 at 5627.743 kb on + strand, within BWI76_RS27120 at 5627.744 kb on + strand, within BWI76_RS27120 at 5627.761 kb on - strand, within BWI76_RS27120 at 5627.762 kb on + strand, within BWI76_RS27120 at 5627.768 kb on - strand, within BWI76_RS27120 at 5627.772 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.815 kb on - strand, within BWI76_RS27120 at 5627.815 kb on - strand, within BWI76_RS27120 at 5627.850 kb on + strand, within BWI76_RS27120 at 5627.876 kb on + strand, within BWI76_RS27120 at 5627.877 kb on - strand, within BWI76_RS27120 at 5627.890 kb on + strand, within BWI76_RS27120 at 5627.906 kb on - strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.921 kb on - strand, within BWI76_RS27120 at 5627.921 kb on - strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on - strand, within BWI76_RS27120 at 5627.931 kb on - strand at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.935 kb on + strand, within BWI76_RS27120 at 5627.938 kb on - strand, within BWI76_RS27120 at 5627.938 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.945 kb on - strand, within BWI76_RS27120 at 5627.945 kb on - strand, within BWI76_RS27120 at 5627.989 kb on + strand at 5627.997 kb on - strand, within BWI76_RS27120 at 5628.001 kb on + strand, within BWI76_RS27120 at 5628.001 kb on + strand, within BWI76_RS27120 at 5628.004 kb on - strand, within BWI76_RS27120 at 5628.004 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.098 kb on + strand, within BWI76_RS27120 at 5628.098 kb on + strand, within BWI76_RS27120 at 5628.105 kb on + strand, within BWI76_RS27120 at 5628.110 kb on + strand, within BWI76_RS27120 at 5628.111 kb on + strand, within BWI76_RS27120 at 5628.116 kb on + strand, within BWI76_RS27120 at 5628.118 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.130 kb on + strand at 5628.167 kb on + strand at 5628.167 kb on + strand at 5628.167 kb on + strand at 5628.175 kb on + strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.179 kb on + strand at 5628.183 kb on - strand at 5628.245 kb on + strand at 5628.250 kb on + strand at 5628.277 kb on - strand at 5628.277 kb on - strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.369 kb on - strand at 5628.404 kb on + strand at 5628.406 kb on + strand at 5628.406 kb on + strand at 5628.406 kb on + strand at 5628.414 kb on - strand at 5628.429 kb on + strand at 5628.435 kb on - strand at 5628.442 kb on + strand at 5628.450 kb on - strand at 5628.480 kb on - strand at 5628.490 kb on - strand at 5628.491 kb on + strand at 5628.491 kb on + strand at 5628.497 kb on - strand at 5628.499 kb on + strand at 5628.499 kb on - strand at 5628.499 kb on - strand at 5628.504 kb on + strand at 5628.505 kb on + strand at 5628.505 kb on + strand at 5628.505 kb on + strand at 5628.513 kb on - strand at 5628.513 kb on - strand at 5628.513 kb on - strand at 5628.518 kb on + strand at 5628.539 kb on - strand at 5628.542 kb on + strand at 5628.566 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.579 kb on - strand at 5628.579 kb on - strand at 5628.579 kb on - strand at 5628.585 kb on + strand at 5628.594 kb on - strand at 5628.613 kb on + strand, within BWI76_RS27125 at 5628.619 kb on + strand, within BWI76_RS27125 at 5628.640 kb on - strand, within BWI76_RS27125 at 5628.640 kb on - strand, within BWI76_RS27125 at 5628.654 kb on + strand, within BWI76_RS27125 at 5628.726 kb on - strand, within BWI76_RS27125 at 5628.726 kb on - strand, within BWI76_RS27125 at 5628.761 kb on - strand, within BWI76_RS27125 at 5628.784 kb on - strand, within BWI76_RS27125 at 5628.804 kb on + strand, within BWI76_RS27125 at 5628.903 kb on + strand, within BWI76_RS27125 at 5628.956 kb on + strand, within BWI76_RS27125 at 5628.964 kb on - strand, within BWI76_RS27125 at 5629.047 kb on - strand, within BWI76_RS27125 at 5629.063 kb on + strand, within BWI76_RS27125 at 5629.063 kb on + strand at 5629.068 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.156 kb on - strand, within BWI76_RS27125 at 5629.169 kb on + strand, within BWI76_RS27125 at 5629.409 kb on + strand at 5629.522 kb on - strand, within BWI76_RS27125 at 5629.550 kb on + strand, within BWI76_RS27125 at 5629.607 kb on + strand, within BWI76_RS27125 at 5629.607 kb on + strand, within BWI76_RS27125 at 5629.615 kb on - strand, within BWI76_RS27125 at 5629.719 kb on - strand, within BWI76_RS27125 at 5629.733 kb on + strand at 5629.857 kb on + strand at 5629.857 kb on + strand at 5629.857 kb on + strand at 5629.857 kb on + strand at 5629.857 kb on + strand at 5629.857 kb on + strand at 5629.859 kb on + strand at 5629.865 kb on - strand at 5629.865 kb on - strand at 5629.865 kb on - strand at 5629.865 kb on - strand at 5629.865 kb on - strand at 5629.867 kb on - strand at 5629.970 kb on - strand at 5630.006 kb on + strand at 5630.046 kb on + strand at 5630.054 kb on - strand at 5630.197 kb on + strand, within BWI76_RS27130 at 5630.199 kb on + strand, within BWI76_RS27130 at 5630.253 kb on + strand, within BWI76_RS27130 at 5630.284 kb on - strand, within BWI76_RS27130 at 5630.377 kb on + strand, within BWI76_RS27130 at 5630.379 kb on + strand, within BWI76_RS27130 at 5630.563 kb on + strand, within BWI76_RS27130 at 5630.617 kb on + strand, within BWI76_RS27130 at 5630.759 kb on - strand, within BWI76_RS27130 at 5630.815 kb on + strand, within BWI76_RS27130 at 5630.836 kb on - strand, within BWI76_RS27130
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 5,627,579 - BWI76_RS27120 0.22 -0.5 5,627,596 - BWI76_RS27120 0.24 -0.0 5,627,657 - BWI76_RS27120 0.31 +0.4 5,627,670 - BWI76_RS27120 0.33 +1.0 5,627,682 - BWI76_RS27120 0.34 -0.1 5,627,704 + BWI76_RS27120 0.37 +0.2 5,627,722 - BWI76_RS27120 0.39 +0.5 5,627,727 + BWI76_RS27120 0.40 -0.2 5,627,727 + BWI76_RS27120 0.40 +0.3 5,627,735 - BWI76_RS27120 0.41 -0.1 5,627,735 - BWI76_RS27120 0.41 +0.3 5,627,743 + BWI76_RS27120 0.42 +0.5 5,627,744 + BWI76_RS27120 0.42 -0.9 5,627,761 - BWI76_RS27120 0.44 +0.0 5,627,762 + BWI76_RS27120 0.44 -0.2 5,627,768 - BWI76_RS27120 0.45 -1.2 5,627,772 - BWI76_RS27120 0.46 +0.6 5,627,814 - BWI76_RS27120 0.51 +0.4 5,627,814 - BWI76_RS27120 0.51 -0.5 5,627,814 - BWI76_RS27120 0.51 -0.6 5,627,815 - BWI76_RS27120 0.51 +0.8 5,627,815 - BWI76_RS27120 0.51 +1.7 5,627,850 + BWI76_RS27120 0.55 +0.2 5,627,876 + BWI76_RS27120 0.59 +1.4 5,627,877 - BWI76_RS27120 0.59 -0.9 5,627,890 + BWI76_RS27120 0.60 -0.4 5,627,906 - BWI76_RS27120 0.62 -2.0 5,627,913 + BWI76_RS27120 0.63 -0.2 5,627,913 + +0.5 5,627,913 + BWI76_RS27120 0.63 +0.9 5,627,913 + BWI76_RS27120 0.63 +1.1 5,627,913 + BWI76_RS27120 0.63 -0.2 5,627,921 - BWI76_RS27120 0.64 -0.9 5,627,921 - BWI76_RS27120 0.64 +1.3 5,627,930 + BWI76_RS27120 0.65 +0.4 5,627,930 + BWI76_RS27120 0.65 -0.5 5,627,930 + BWI76_RS27120 0.65 -0.4 5,627,931 + BWI76_RS27120 0.65 -0.2 5,627,931 + BWI76_RS27120 0.65 +0.7 5,627,931 + BWI76_RS27120 0.65 -1.1 5,627,931 - BWI76_RS27120 0.65 -0.1 5,627,931 - -0.0 5,627,933 - BWI76_RS27120 0.66 +0.7 5,627,933 - BWI76_RS27120 0.66 -1.2 5,627,933 - BWI76_RS27120 0.66 -0.6 5,627,933 - BWI76_RS27120 0.66 -1.4 5,627,935 + BWI76_RS27120 0.66 +0.1 5,627,938 - BWI76_RS27120 0.66 -1.0 5,627,938 - BWI76_RS27120 0.66 -0.0 5,627,943 - BWI76_RS27120 0.67 -0.7 5,627,943 - BWI76_RS27120 0.67 +1.3 5,627,943 - BWI76_RS27120 0.67 +0.6 5,627,945 - BWI76_RS27120 0.67 -1.0 5,627,945 - BWI76_RS27120 0.67 -1.5 5,627,989 + +0.2 5,627,997 - BWI76_RS27120 0.74 +1.0 5,628,001 + BWI76_RS27120 0.74 -1.2 5,628,001 + BWI76_RS27120 0.74 +0.2 5,628,004 - BWI76_RS27120 0.75 -0.3 5,628,004 - BWI76_RS27120 0.75 -0.5 5,628,009 - BWI76_RS27120 0.75 -0.5 5,628,009 - BWI76_RS27120 0.75 -1.1 5,628,009 - BWI76_RS27120 0.75 +0.3 5,628,015 + BWI76_RS27120 0.76 -0.8 5,628,015 + BWI76_RS27120 0.76 -0.1 5,628,015 + BWI76_RS27120 0.76 -0.6 5,628,015 + BWI76_RS27120 0.76 -1.5 5,628,015 + BWI76_RS27120 0.76 -0.5 5,628,015 + BWI76_RS27120 0.76 +0.2 5,628,015 + BWI76_RS27120 0.76 -0.3 5,628,015 + BWI76_RS27120 0.76 +0.4 5,628,015 + BWI76_RS27120 0.76 -1.2 5,628,015 + BWI76_RS27120 0.76 -0.7 5,628,015 + BWI76_RS27120 0.76 +0.2 5,628,015 + BWI76_RS27120 0.76 -0.2 5,628,023 - BWI76_RS27120 0.77 -0.8 5,628,023 - BWI76_RS27120 0.77 -1.2 5,628,023 - BWI76_RS27120 0.77 -1.0 5,628,023 - BWI76_RS27120 0.77 +0.1 5,628,023 - BWI76_RS27120 0.77 +0.5 5,628,023 - BWI76_RS27120 0.77 -0.5 5,628,023 - BWI76_RS27120 0.77 +0.9 5,628,098 + BWI76_RS27120 0.86 -0.1 5,628,098 + BWI76_RS27120 0.86 +0.3 5,628,105 + BWI76_RS27120 0.87 -0.1 5,628,110 + BWI76_RS27120 0.88 +1.2 5,628,111 + BWI76_RS27120 0.88 +0.1 5,628,116 + BWI76_RS27120 0.88 +1.0 5,628,118 - BWI76_RS27120 0.89 +2.8 5,628,119 - BWI76_RS27120 0.89 +0.8 5,628,119 - BWI76_RS27120 0.89 -0.1 5,628,119 - BWI76_RS27120 0.89 -1.0 5,628,119 - BWI76_RS27120 0.89 -0.3 5,628,119 - BWI76_RS27120 0.89 +0.7 5,628,130 + -0.9 5,628,167 + -0.9 5,628,167 + -0.9 5,628,167 + +0.1 5,628,175 + -0.8 5,628,175 - +0.3 5,628,175 - -1.2 5,628,175 - -0.0 5,628,175 - -0.2 5,628,179 + -1.0 5,628,183 - -0.3 5,628,245 + +0.5 5,628,250 + +2.1 5,628,277 - -0.2 5,628,277 - -0.2 5,628,315 + -0.4 5,628,315 + -0.2 5,628,315 + -0.3 5,628,315 + +1.5 5,628,315 + -0.5 5,628,323 - +0.2 5,628,323 - +0.6 5,628,323 - -0.8 5,628,323 - -0.4 5,628,323 - -1.5 5,628,323 - +1.0 5,628,369 - -0.5 5,628,404 + +0.3 5,628,406 + +0.9 5,628,406 + +2.0 5,628,406 + -0.7 5,628,414 - -0.1 5,628,429 + -0.0 5,628,435 - -0.5 5,628,442 + +0.7 5,628,450 - -0.0 5,628,480 - -1.8 5,628,490 - +1.6 5,628,491 + -1.0 5,628,491 + -0.3 5,628,497 - -1.6 5,628,499 + -0.3 5,628,499 - +1.0 5,628,499 - -1.5 5,628,504 + -0.0 5,628,505 + -1.0 5,628,505 + -1.3 5,628,505 + -0.4 5,628,513 - +0.5 5,628,513 - +1.0 5,628,513 - -0.3 5,628,518 + -1.4 5,628,539 - -0.1 5,628,542 + +0.3 5,628,566 + -0.2 5,628,571 + -0.9 5,628,571 + +2.5 5,628,571 + -0.1 5,628,571 + +1.4 5,628,571 + -0.1 5,628,579 - -0.2 5,628,579 - +0.3 5,628,579 - +0.2 5,628,585 + -1.7 5,628,594 - -0.7 5,628,613 + BWI76_RS27125 0.11 +0.4 5,628,619 + BWI76_RS27125 0.11 -0.3 5,628,640 - BWI76_RS27125 0.13 -1.6 5,628,640 - BWI76_RS27125 0.13 -0.6 5,628,654 + BWI76_RS27125 0.14 -0.7 5,628,726 - BWI76_RS27125 0.19 -2.7 5,628,726 - BWI76_RS27125 0.19 -0.6 5,628,761 - BWI76_RS27125 0.21 -0.6 5,628,784 - BWI76_RS27125 0.23 -0.0 5,628,804 + BWI76_RS27125 0.24 -1.7 5,628,903 + BWI76_RS27125 0.31 -0.3 5,628,956 + BWI76_RS27125 0.35 -0.6 5,628,964 - BWI76_RS27125 0.36 +0.2 5,629,047 - BWI76_RS27125 0.42 -2.4 5,629,063 + BWI76_RS27125 0.43 -0.6 5,629,063 + +1.5 5,629,068 + BWI76_RS27125 0.43 -0.7 5,629,148 + BWI76_RS27125 0.49 -0.9 5,629,148 + BWI76_RS27125 0.49 -0.0 5,629,148 + BWI76_RS27125 0.49 -1.7 5,629,148 + BWI76_RS27125 0.49 -0.0 5,629,148 + BWI76_RS27125 0.49 -1.3 5,629,156 - BWI76_RS27125 0.49 -0.0 5,629,169 + BWI76_RS27125 0.50 -0.6 5,629,409 + -0.5 5,629,522 - BWI76_RS27125 0.76 +0.3 5,629,550 + BWI76_RS27125 0.78 -0.6 5,629,607 + BWI76_RS27125 0.82 +0.0 5,629,607 + BWI76_RS27125 0.82 -0.2 5,629,615 - BWI76_RS27125 0.82 +1.0 5,629,719 - BWI76_RS27125 0.90 -0.1 5,629,733 + -1.7 5,629,857 + -0.0 5,629,857 + -0.0 5,629,857 + -0.8 5,629,857 + -1.1 5,629,857 + +0.1 5,629,857 + -0.3 5,629,859 + +0.1 5,629,865 - -0.9 5,629,865 - +0.5 5,629,865 - +0.4 5,629,865 - -0.4 5,629,865 - -0.2 5,629,867 - -0.3 5,629,970 - -0.8 5,630,006 + +0.5 5,630,046 + -0.2 5,630,054 - -0.3 5,630,197 + BWI76_RS27130 0.16 +0.1 5,630,199 + BWI76_RS27130 0.17 +0.1 5,630,253 + BWI76_RS27130 0.19 +0.2 5,630,284 - BWI76_RS27130 0.21 -0.5 5,630,377 + BWI76_RS27130 0.26 +0.7 5,630,379 + BWI76_RS27130 0.26 -0.3 5,630,563 + BWI76_RS27130 0.35 -0.1 5,630,617 + BWI76_RS27130 0.38 +0.0 5,630,759 - BWI76_RS27130 0.45 +0.6 5,630,815 + BWI76_RS27130 0.48 +0.5 5,630,836 - BWI76_RS27130 0.49 +0.5
Or see this region's nucleotide sequence