Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotides BWI76_RS13790 and BWI76_RS13795 are separated by 10 nucleotides BWI76_RS13795 and BWI76_RS13800 are separated by 383 nucleotides
BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536
_RS13785
BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477
_RS13790
BWI76_RS13795: BWI76_RS13795 - ABC transporter substrate binding protein, at 2,876,488 to 2,878,110
_RS13795
BWI76_RS13800: BWI76_RS13800 - zinc-dependent alcohol dehydrogenase, at 2,878,494 to 2,879,504
_RS13800
Position (kb)
2876
2877
2878
2879 Strain fitness (log2 ratio)
-1
0
1 at 2875.640 kb on - strand, within BWI76_RS13790 at 2875.700 kb on - strand, within BWI76_RS13790 at 2875.855 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.994 kb on + strand, within BWI76_RS13790 at 2876.486 kb on + strand at 2876.494 kb on - strand at 2876.549 kb on + strand at 2876.621 kb on + strand at 2876.639 kb on - strand at 2876.898 kb on + strand, within BWI76_RS13795 at 2877.017 kb on - strand, within BWI76_RS13795 at 2877.091 kb on + strand, within BWI76_RS13795 at 2877.096 kb on + strand, within BWI76_RS13795 at 2877.160 kb on - strand, within BWI76_RS13795 at 2877.164 kb on + strand, within BWI76_RS13795 at 2877.165 kb on - strand, within BWI76_RS13795 at 2877.347 kb on + strand, within BWI76_RS13795 at 2877.808 kb on + strand, within BWI76_RS13795 at 2877.808 kb on + strand, within BWI76_RS13795 at 2877.816 kb on - strand, within BWI76_RS13795 at 2877.816 kb on - strand, within BWI76_RS13795 at 2878.274 kb on - strand at 2878.320 kb on + strand at 2878.322 kb on - strand at 2878.326 kb on + strand at 2878.419 kb on + strand at 2878.514 kb on + strand at 2878.537 kb on + strand at 2878.670 kb on + strand, within BWI76_RS13800 at 2878.680 kb on + strand, within BWI76_RS13800 at 2878.925 kb on + strand, within BWI76_RS13800 at 2878.968 kb on + strand, within BWI76_RS13800 at 2879.023 kb on + strand, within BWI76_RS13800
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 2,875,640 - BWI76_RS13790 0.11 -0.3 2,875,700 - BWI76_RS13790 0.18 -0.4 2,875,855 + BWI76_RS13790 0.34 -0.1 2,875,877 + BWI76_RS13790 0.36 -0.6 2,875,877 + BWI76_RS13790 0.36 +0.2 2,875,885 - BWI76_RS13790 0.37 -0.3 2,875,885 - BWI76_RS13790 0.37 +0.9 2,875,994 + BWI76_RS13790 0.49 -0.2 2,876,486 + -0.2 2,876,494 - +0.4 2,876,549 + -0.0 2,876,621 + -0.6 2,876,639 - -1.2 2,876,898 + BWI76_RS13795 0.25 -0.8 2,877,017 - BWI76_RS13795 0.33 -1.1 2,877,091 + BWI76_RS13795 0.37 -0.5 2,877,096 + BWI76_RS13795 0.37 +0.1 2,877,160 - BWI76_RS13795 0.41 -0.8 2,877,164 + BWI76_RS13795 0.42 -1.4 2,877,165 - BWI76_RS13795 0.42 -0.9 2,877,347 + BWI76_RS13795 0.53 -0.4 2,877,808 + BWI76_RS13795 0.81 +0.1 2,877,808 + BWI76_RS13795 0.81 -1.2 2,877,816 - BWI76_RS13795 0.82 +0.6 2,877,816 - BWI76_RS13795 0.82 -0.8 2,878,274 - -0.4 2,878,320 + -0.6 2,878,322 - +1.5 2,878,326 + -0.4 2,878,419 + +0.8 2,878,514 + +0.6 2,878,537 + +0.5 2,878,670 + BWI76_RS13800 0.17 -0.8 2,878,680 + BWI76_RS13800 0.18 +0.2 2,878,925 + BWI76_RS13800 0.43 +0.1 2,878,968 + BWI76_RS13800 0.47 -0.0 2,879,023 + BWI76_RS13800 0.52 -0.6
Or see this region's nucleotide sequence