Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27885 and BWI76_RS27890 are separated by 341 nucleotides BWI76_RS27890 and BWI76_RS27895 overlap by 33 nucleotides
BWI76_RS27885: BWI76_RS27885 - PTS alpha-glucoside transporter subunit IICB, at 5,782,842 to 5,784,464
_RS27885
BWI76_RS27890: BWI76_RS27890 - GntR family transcriptional regulator, at 5,784,806 to 5,785,552
_RS27890
BWI76_RS27895: BWI76_RS27895 - transporter, at 5,785,520 to 5,787,181
_RS27895
Position (kb)
5784
5785
5786 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5783.828 kb on + strand, within BWI76_RS27885 at 5783.855 kb on - strand, within BWI76_RS27885 at 5783.855 kb on - strand, within BWI76_RS27885 at 5783.876 kb on - strand, within BWI76_RS27885 at 5783.884 kb on - strand, within BWI76_RS27885 at 5783.942 kb on - strand, within BWI76_RS27885 at 5784.000 kb on + strand, within BWI76_RS27885 at 5784.141 kb on + strand, within BWI76_RS27885 at 5784.218 kb on - strand, within BWI76_RS27885 at 5784.224 kb on - strand, within BWI76_RS27885 at 5784.301 kb on - strand, within BWI76_RS27885 at 5784.327 kb on + strand at 5784.379 kb on - strand at 5784.429 kb on - strand at 5784.486 kb on + strand at 5784.501 kb on + strand at 5784.501 kb on + strand at 5784.501 kb on + strand at 5784.501 kb on + strand at 5784.509 kb on - strand at 5784.542 kb on + strand at 5784.683 kb on - strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.707 kb on - strand at 5784.707 kb on - strand at 5784.707 kb on - strand at 5784.707 kb on - strand at 5784.790 kb on + strand at 5784.866 kb on - strand at 5784.957 kb on + strand, within BWI76_RS27890 at 5785.018 kb on - strand, within BWI76_RS27890 at 5785.066 kb on + strand, within BWI76_RS27890 at 5785.096 kb on - strand, within BWI76_RS27890 at 5785.301 kb on + strand, within BWI76_RS27890 at 5785.399 kb on + strand, within BWI76_RS27890 at 5785.446 kb on + strand, within BWI76_RS27890 at 5785.538 kb on - strand at 5785.538 kb on - strand at 5785.947 kb on - strand, within BWI76_RS27895 at 5785.973 kb on + strand, within BWI76_RS27895 at 5785.976 kb on - strand, within BWI76_RS27895 at 5785.982 kb on - strand, within BWI76_RS27895 at 5786.020 kb on + strand, within BWI76_RS27895 at 5786.038 kb on + strand, within BWI76_RS27895 at 5786.205 kb on - strand, within BWI76_RS27895 at 5786.241 kb on - strand, within BWI76_RS27895 at 5786.423 kb on - strand, within BWI76_RS27895 at 5786.433 kb on - strand, within BWI76_RS27895 at 5786.466 kb on + strand, within BWI76_RS27895 at 5786.466 kb on + strand, within BWI76_RS27895 at 5786.466 kb on + strand, within BWI76_RS27895 at 5786.498 kb on + strand, within BWI76_RS27895
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 5,783,828 + BWI76_RS27885 0.61 +0.6 5,783,855 - BWI76_RS27885 0.62 -1.8 5,783,855 - BWI76_RS27885 0.62 -0.6 5,783,876 - BWI76_RS27885 0.64 -1.3 5,783,884 - BWI76_RS27885 0.64 +0.2 5,783,942 - BWI76_RS27885 0.68 +0.5 5,784,000 + BWI76_RS27885 0.71 -0.2 5,784,141 + BWI76_RS27885 0.80 -1.5 5,784,218 - BWI76_RS27885 0.85 -0.5 5,784,224 - BWI76_RS27885 0.85 +0.2 5,784,301 - BWI76_RS27885 0.90 -0.0 5,784,327 + -0.3 5,784,379 - -1.9 5,784,429 - +1.8 5,784,486 + -0.5 5,784,501 + +0.6 5,784,501 + -0.3 5,784,501 + +0.6 5,784,501 + -1.6 5,784,509 - +0.3 5,784,542 + +0.0 5,784,683 - +0.1 5,784,699 + -0.1 5,784,699 + +0.3 5,784,699 + +0.3 5,784,699 + -0.6 5,784,699 + +0.2 5,784,707 - +0.6 5,784,707 - +0.4 5,784,707 - +0.2 5,784,707 - +2.0 5,784,790 + +0.6 5,784,866 - -0.3 5,784,957 + BWI76_RS27890 0.20 +0.0 5,785,018 - BWI76_RS27890 0.28 -0.4 5,785,066 + BWI76_RS27890 0.35 +1.3 5,785,096 - BWI76_RS27890 0.39 +1.9 5,785,301 + BWI76_RS27890 0.66 +0.7 5,785,399 + BWI76_RS27890 0.79 +0.3 5,785,446 + BWI76_RS27890 0.86 +0.1 5,785,538 - +0.4 5,785,538 - -0.2 5,785,947 - BWI76_RS27895 0.26 -0.3 5,785,973 + BWI76_RS27895 0.27 +0.3 5,785,976 - BWI76_RS27895 0.27 +0.2 5,785,982 - BWI76_RS27895 0.28 -0.2 5,786,020 + BWI76_RS27895 0.30 -0.4 5,786,038 + BWI76_RS27895 0.31 +1.2 5,786,205 - BWI76_RS27895 0.41 +0.0 5,786,241 - BWI76_RS27895 0.43 -0.7 5,786,423 - BWI76_RS27895 0.54 +0.7 5,786,433 - BWI76_RS27895 0.55 +0.4 5,786,466 + BWI76_RS27895 0.57 +0.2 5,786,466 + BWI76_RS27895 0.57 +0.3 5,786,466 + BWI76_RS27895 0.57 +0.3 5,786,498 + BWI76_RS27895 0.59 -0.2
Or see this region's nucleotide sequence