Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18615

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18610 and BWI76_RS18615 are separated by 213 nucleotidesBWI76_RS18615 and BWI76_RS18620 are separated by 102 nucleotides BWI76_RS18610: BWI76_RS18610 - transcriptional regulator LysR, at 3,858,896 to 3,859,882 _RS18610 BWI76_RS18615: BWI76_RS18615 - glutathione S-transferase domain protein, at 3,860,096 to 3,860,704 _RS18615 BWI76_RS18620: BWI76_RS18620 - L,D-transpeptidase, at 3,860,807 to 3,861,748 _RS18620 Position (kb) 3860 3861Strain fitness (log2 ratio) -2 -1 0 1at 3859.334 kb on + strand, within BWI76_RS18610at 3859.580 kb on - strand, within BWI76_RS18610at 3859.677 kb on - strand, within BWI76_RS18610at 3859.972 kb on + strandat 3860.006 kb on + strandat 3860.006 kb on + strandat 3860.014 kb on + strandat 3860.016 kb on - strandat 3860.038 kb on - strandat 3860.338 kb on + strand, within BWI76_RS18615at 3860.362 kb on + strand, within BWI76_RS18615at 3860.387 kb on - strand, within BWI76_RS18615at 3860.477 kb on - strand, within BWI76_RS18615at 3860.492 kb on - strand, within BWI76_RS18615at 3860.520 kb on - strand, within BWI76_RS18615at 3860.558 kb on - strand, within BWI76_RS18615at 3860.560 kb on + strand, within BWI76_RS18615at 3860.617 kb on + strandat 3860.705 kb on + strandat 3860.713 kb on - strandat 3860.757 kb on - strandat 3860.867 kb on + strandat 3860.966 kb on + strand, within BWI76_RS18620at 3861.131 kb on + strand, within BWI76_RS18620at 3861.139 kb on - strand, within BWI76_RS18620at 3861.321 kb on + strand, within BWI76_RS18620at 3861.481 kb on + strand, within BWI76_RS18620at 3861.506 kb on + strand, within BWI76_RS18620at 3861.526 kb on + strand, within BWI76_RS18620at 3861.534 kb on - strand, within BWI76_RS18620at 3861.534 kb on - strand, within BWI76_RS18620at 3861.534 kb on - strand, within BWI76_RS18620at 3861.535 kb on - strand, within BWI76_RS18620at 3861.575 kb on + strand, within BWI76_RS18620at 3861.594 kb on + strandat 3861.675 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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3,859,334 + BWI76_RS18610 0.44 +0.4
3,859,580 - BWI76_RS18610 0.69 -2.1
3,859,677 - BWI76_RS18610 0.79 -0.8
3,859,972 + -0.1
3,860,006 + -0.5
3,860,006 + +0.1
3,860,014 + +0.0
3,860,016 - -0.5
3,860,038 - +1.1
3,860,338 + BWI76_RS18615 0.40 +0.1
3,860,362 + BWI76_RS18615 0.44 +0.9
3,860,387 - BWI76_RS18615 0.48 +0.4
3,860,477 - BWI76_RS18615 0.63 -0.0
3,860,492 - BWI76_RS18615 0.65 +0.4
3,860,520 - BWI76_RS18615 0.70 +1.2
3,860,558 - BWI76_RS18615 0.76 +0.5
3,860,560 + BWI76_RS18615 0.76 +0.0
3,860,617 + +1.3
3,860,705 + +0.1
3,860,713 - -0.0
3,860,757 - -0.5
3,860,867 + +0.3
3,860,966 + BWI76_RS18620 0.17 +0.1
3,861,131 + BWI76_RS18620 0.34 -0.7
3,861,139 - BWI76_RS18620 0.35 -0.8
3,861,321 + BWI76_RS18620 0.55 -0.7
3,861,481 + BWI76_RS18620 0.72 +0.7
3,861,506 + BWI76_RS18620 0.74 +0.6
3,861,526 + BWI76_RS18620 0.76 -0.3
3,861,534 - BWI76_RS18620 0.77 -0.2
3,861,534 - BWI76_RS18620 0.77 +1.3
3,861,534 - BWI76_RS18620 0.77 -0.7
3,861,535 - BWI76_RS18620 0.77 -0.0
3,861,575 + BWI76_RS18620 0.82 -0.0
3,861,594 + +1.2
3,861,675 + +0.2

Or see this region's nucleotide sequence