Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19980

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19975 and BWI76_RS19980 are separated by 23 nucleotidesBWI76_RS19980 and BWI76_RS19985 are separated by 14 nucleotides BWI76_RS19975: BWI76_RS19975 - sn-glycerol-3-phosphate dehydrogenase subunit C, at 4,184,597 to 4,185,776 _RS19975 BWI76_RS19980: BWI76_RS19980 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 4,185,800 to 4,186,603 _RS19980 BWI76_RS19985: BWI76_RS19985 - MFS transporter, at 4,186,618 to 4,187,907 _RS19985 Position (kb) 4185 4186 4187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4184.825 kb on - strand, within BWI76_RS19975at 4185.312 kb on + strand, within BWI76_RS19975at 4185.313 kb on - strandat 4185.319 kb on + strand, within BWI76_RS19975at 4185.319 kb on + strand, within BWI76_RS19975at 4185.327 kb on - strandat 4185.327 kb on - strand, within BWI76_RS19975at 4185.327 kb on - strand, within BWI76_RS19975at 4185.327 kb on - strand, within BWI76_RS19975at 4185.522 kb on - strand, within BWI76_RS19975at 4185.863 kb on - strandat 4185.920 kb on + strand, within BWI76_RS19980at 4186.368 kb on - strand, within BWI76_RS19980at 4186.536 kb on - strandat 4186.843 kb on - strand, within BWI76_RS19985at 4186.864 kb on - strand, within BWI76_RS19985at 4187.033 kb on + strand, within BWI76_RS19985at 4187.033 kb on + strand, within BWI76_RS19985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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4,184,825 - BWI76_RS19975 0.19 +1.1
4,185,312 + BWI76_RS19975 0.61 -0.6
4,185,313 - +2.7
4,185,319 + BWI76_RS19975 0.61 +1.1
4,185,319 + BWI76_RS19975 0.61 +1.2
4,185,327 - +1.9
4,185,327 - BWI76_RS19975 0.62 +0.8
4,185,327 - BWI76_RS19975 0.62 -0.9
4,185,327 - BWI76_RS19975 0.62 -0.7
4,185,522 - BWI76_RS19975 0.78 -1.4
4,185,863 - +0.0
4,185,920 + BWI76_RS19980 0.15 +1.1
4,186,368 - BWI76_RS19980 0.71 +0.4
4,186,536 - +0.1
4,186,843 - BWI76_RS19985 0.17 -0.0
4,186,864 - BWI76_RS19985 0.19 +0.3
4,187,033 + BWI76_RS19985 0.32 +1.4
4,187,033 + BWI76_RS19985 0.32 -3.5

Or see this region's nucleotide sequence