Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15810 and BWI76_RS15815 overlap by 4 nucleotides BWI76_RS15815 and BWI76_RS15820 are separated by 322 nucleotides BWI76_RS15820 and BWI76_RS15825 are separated by 427 nucleotides BWI76_RS15825 and BWI76_RS15830 are separated by 88 nucleotides
BWI76_RS15810: BWI76_RS15810 - hypothetical protein, at 3,288,347 to 3,288,781
_RS15810
BWI76_RS15815: BWI76_RS15815 - hypothetical protein, at 3,288,778 to 3,289,425
_RS15815
BWI76_RS15820: BWI76_RS15820 - hypothetical protein, at 3,289,748 to 3,289,951
_RS15820
BWI76_RS15825: BWI76_RS15825 - hypothetical protein, at 3,290,379 to 3,290,573
_RS15825
BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666
_RS15830
Position (kb) 3289
3290 Strain fitness (log2 ratio) -9
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 3288.832 kb on + strand at 3288.832 kb on + strand at 3288.832 kb on + strand at 3288.833 kb on + strand at 3288.850 kb on - strand, within BWI76_RS15815 at 3288.900 kb on + strand, within BWI76_RS15815 at 3288.901 kb on + strand at 3288.912 kb on + strand, within BWI76_RS15815 at 3288.959 kb on - strand, within BWI76_RS15815 at 3288.966 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.038 kb on - strand, within BWI76_RS15815 at 3289.038 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.197 kb on - strand, within BWI76_RS15815 at 3289.202 kb on - strand, within BWI76_RS15815 at 3289.202 kb on - strand, within BWI76_RS15815 at 3289.297 kb on + strand, within BWI76_RS15815 at 3289.305 kb on + strand, within BWI76_RS15815 at 3289.311 kb on + strand, within BWI76_RS15815 at 3289.336 kb on + strand, within BWI76_RS15815 at 3289.392 kb on - strand at 3289.664 kb on + strand at 3289.672 kb on - strand at 3289.753 kb on - strand at 3290.312 kb on + strand at 3290.455 kb on + strand, within BWI76_RS15825 at 3290.553 kb on + strand, within BWI76_RS15825 at 3290.576 kb on + strand at 3290.743 kb on + strand at 3290.827 kb on + strand, within BWI76_RS15830 at 3290.862 kb on - strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.877 kb on - strand, within BWI76_RS15830 at 3290.889 kb on + strand, within BWI76_RS15830
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 3,288,832 + -1.3 3,288,832 + -0.3 3,288,832 + -0.9 3,288,833 + -0.0 3,288,850 - BWI76_RS15815 0.11 -0.4 3,288,900 + BWI76_RS15815 0.19 -0.7 3,288,901 + -1.5 3,288,912 + BWI76_RS15815 0.21 -1.1 3,288,959 - BWI76_RS15815 0.28 -2.5 3,288,966 + BWI76_RS15815 0.29 -0.1 3,289,030 + BWI76_RS15815 0.39 +0.3 3,289,030 + BWI76_RS15815 0.39 -0.8 3,289,030 + BWI76_RS15815 0.39 +0.0 3,289,036 + BWI76_RS15815 0.40 -0.1 3,289,036 + +0.1 3,289,036 + BWI76_RS15815 0.40 +0.0 3,289,036 + BWI76_RS15815 0.40 -0.0 3,289,038 - BWI76_RS15815 0.40 -0.4 3,289,038 - BWI76_RS15815 0.40 -0.1 3,289,044 - BWI76_RS15815 0.41 -0.8 3,289,044 - BWI76_RS15815 0.41 -1.3 3,289,044 - BWI76_RS15815 0.41 -0.2 3,289,197 - BWI76_RS15815 0.65 +0.2 3,289,202 - BWI76_RS15815 0.65 -0.6 3,289,202 - BWI76_RS15815 0.65 -0.2 3,289,297 + BWI76_RS15815 0.80 -1.3 3,289,305 + BWI76_RS15815 0.81 -0.4 3,289,311 + BWI76_RS15815 0.82 -0.0 3,289,336 + BWI76_RS15815 0.86 -0.3 3,289,392 - -1.3 3,289,664 + +0.1 3,289,672 - -0.1 3,289,753 - -0.3 3,290,312 + -3.8 3,290,455 + BWI76_RS15825 0.39 -3.0 3,290,553 + BWI76_RS15825 0.89 -4.2 3,290,576 + -5.5 3,290,743 + -7.7 3,290,827 + BWI76_RS15830 0.16 -8.9 3,290,862 - BWI76_RS15830 0.20 -0.6 3,290,869 + BWI76_RS15830 0.21 -8.8 3,290,869 + BWI76_RS15830 0.21 -7.1 3,290,877 - BWI76_RS15830 0.21 -0.9 3,290,889 + BWI76_RS15830 0.23 -7.6
Or see this region's nucleotide sequence