Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26750 and BWI76_RS26755 are separated by 183 nucleotides BWI76_RS26755 and BWI76_RS26760 are separated by 221 nucleotides
BWI76_RS26750: BWI76_RS26750 - PfkB domain-containing protein, at 5,539,645 to 5,540,580
_RS26750
BWI76_RS26755: BWI76_RS26755 - peptidase M16, at 5,540,764 to 5,542,269
_RS26755
BWI76_RS26760: BWI76_RS26760 - C4-dicarboxylate transport protein DctA (from data) , at 5,542,491 to 5,543,777
_RS26760
Position (kb)
5540
5541
5542
5543 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5539.900 kb on + strand, within BWI76_RS26750 at 5539.900 kb on + strand, within BWI76_RS26750 at 5540.003 kb on - strand, within BWI76_RS26750 at 5540.009 kb on + strand, within BWI76_RS26750 at 5540.024 kb on - strand, within BWI76_RS26750 at 5540.295 kb on - strand, within BWI76_RS26750 at 5540.295 kb on - strand, within BWI76_RS26750 at 5540.635 kb on + strand at 5540.697 kb on + strand at 5540.941 kb on - strand, within BWI76_RS26755 at 5541.095 kb on - strand, within BWI76_RS26755 at 5541.284 kb on - strand, within BWI76_RS26755 at 5541.292 kb on + strand, within BWI76_RS26755 at 5541.426 kb on + strand, within BWI76_RS26755 at 5541.434 kb on - strand, within BWI76_RS26755 at 5541.484 kb on - strand, within BWI76_RS26755 at 5541.620 kb on - strand, within BWI76_RS26755 at 5541.951 kb on + strand, within BWI76_RS26755 at 5541.961 kb on - strand, within BWI76_RS26755 at 5541.987 kb on - strand, within BWI76_RS26755 at 5541.987 kb on - strand, within BWI76_RS26755 at 5541.987 kb on - strand, within BWI76_RS26755 at 5542.097 kb on - strand, within BWI76_RS26755 at 5542.134 kb on - strand at 5542.134 kb on - strand at 5542.211 kb on - strand at 5542.270 kb on - strand at 5542.359 kb on - strand at 5542.413 kb on - strand at 5542.531 kb on - strand at 5542.561 kb on - strand at 5542.568 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,539,900 + BWI76_RS26750 0.27 +0.3 5,539,900 + BWI76_RS26750 0.27 +0.9 5,540,003 - BWI76_RS26750 0.38 -0.5 5,540,009 + BWI76_RS26750 0.39 -2.9 5,540,024 - BWI76_RS26750 0.40 +0.8 5,540,295 - BWI76_RS26750 0.69 +0.3 5,540,295 - BWI76_RS26750 0.69 -0.2 5,540,635 + -0.0 5,540,697 + +0.4 5,540,941 - BWI76_RS26755 0.12 -1.8 5,541,095 - BWI76_RS26755 0.22 -0.5 5,541,284 - BWI76_RS26755 0.35 -1.2 5,541,292 + BWI76_RS26755 0.35 -1.7 5,541,426 + BWI76_RS26755 0.44 -1.0 5,541,434 - BWI76_RS26755 0.44 -1.4 5,541,484 - BWI76_RS26755 0.48 -0.8 5,541,620 - BWI76_RS26755 0.57 -1.3 5,541,951 + BWI76_RS26755 0.79 +0.9 5,541,961 - BWI76_RS26755 0.79 -1.7 5,541,987 - BWI76_RS26755 0.81 -1.2 5,541,987 - BWI76_RS26755 0.81 -1.3 5,541,987 - BWI76_RS26755 0.81 -0.5 5,542,097 - BWI76_RS26755 0.89 -1.0 5,542,134 - -0.1 5,542,134 - -0.7 5,542,211 - -2.5 5,542,270 - -0.4 5,542,359 - -1.1 5,542,413 - -0.3 5,542,531 - +0.3 5,542,561 - -0.3 5,542,568 + +0.1
Or see this region's nucleotide sequence