Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26200 and BWI76_RS26205 overlap by 1 nucleotides BWI76_RS26205 and BWI76_RS26210 are separated by 80 nucleotides
BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888
_RS26200
BWI76_RS26205: BWI76_RS26205 - glucose-1-phosphate adenylyltransferase, at 5,420,888 to 5,422,183
_RS26205
BWI76_RS26210: BWI76_RS26210 - glycogen debranching enzyme, at 5,422,264 to 5,424,240
_RS26210
Position (kb)
5420
5421
5422
5423 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5420.112 kb on - strand, within BWI76_RS26200 at 5420.273 kb on - strand, within BWI76_RS26200 at 5420.275 kb on + strand, within BWI76_RS26200 at 5420.280 kb on + strand, within BWI76_RS26200 at 5420.283 kb on - strand, within BWI76_RS26200 at 5420.578 kb on + strand, within BWI76_RS26200 at 5420.670 kb on - strand, within BWI76_RS26200 at 5420.724 kb on - strand, within BWI76_RS26200 at 5420.852 kb on + strand at 5420.869 kb on - strand at 5420.896 kb on + strand at 5420.904 kb on - strand at 5421.000 kb on + strand at 5421.506 kb on - strand, within BWI76_RS26205 at 5421.640 kb on + strand, within BWI76_RS26205 at 5421.648 kb on - strand, within BWI76_RS26205 at 5421.946 kb on + strand, within BWI76_RS26205 at 5422.013 kb on + strand, within BWI76_RS26205 at 5422.099 kb on - strand at 5422.263 kb on - strand at 5422.333 kb on - strand at 5422.360 kb on + strand at 5422.373 kb on + strand at 5422.381 kb on - strand at 5422.462 kb on - strand, within BWI76_RS26210 at 5422.483 kb on + strand, within BWI76_RS26210 at 5422.516 kb on + strand, within BWI76_RS26210 at 5422.864 kb on - strand, within BWI76_RS26210 at 5422.910 kb on - strand, within BWI76_RS26210 at 5422.985 kb on + strand, within BWI76_RS26210
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,420,112 - BWI76_RS26200 0.46 -3.3 5,420,273 - BWI76_RS26200 0.57 -3.2 5,420,275 + BWI76_RS26200 0.57 -4.4 5,420,280 + BWI76_RS26200 0.58 -3.5 5,420,283 - BWI76_RS26200 0.58 -4.6 5,420,578 + BWI76_RS26200 0.78 -2.1 5,420,670 - BWI76_RS26200 0.85 -0.4 5,420,724 - BWI76_RS26200 0.88 -0.8 5,420,852 + -0.4 5,420,869 - -1.0 5,420,896 + +0.6 5,420,904 - -0.3 5,421,000 + +0.5 5,421,506 - BWI76_RS26205 0.48 +0.3 5,421,640 + BWI76_RS26205 0.58 +0.5 5,421,648 - BWI76_RS26205 0.59 +0.3 5,421,946 + BWI76_RS26205 0.82 +0.5 5,422,013 + BWI76_RS26205 0.87 -0.4 5,422,099 - -0.8 5,422,263 - -0.0 5,422,333 - -0.2 5,422,360 + -0.4 5,422,373 + +0.3 5,422,381 - +0.4 5,422,462 - BWI76_RS26210 0.10 +0.0 5,422,483 + BWI76_RS26210 0.11 +0.0 5,422,516 + BWI76_RS26210 0.13 +0.5 5,422,864 - BWI76_RS26210 0.30 +1.0 5,422,910 - BWI76_RS26210 0.33 +0.3 5,422,985 + BWI76_RS26210 0.36 -0.4
Or see this region's nucleotide sequence