Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25900 and BWI76_RS25905 overlap by 1 nucleotides BWI76_RS25905 and BWI76_RS25910 are separated by 166 nucleotides BWI76_RS25910 and BWI76_RS25915 are separated by 222 nucleotides BWI76_RS25915 and BWI76_RS25920 are separated by 59 nucleotides
BWI76_RS25900: BWI76_RS25900 - sulfurtransferase TusD, at 5,356,853 to 5,357,239
_RS25900
BWI76_RS25905: BWI76_RS25905 - hypothetical protein, at 5,357,239 to 5,357,961
_RS25905
BWI76_RS25910: BWI76_RS25910 - peptidyl-prolyl cis-trans isomerase, at 5,358,128 to 5,358,946
_RS25910
BWI76_RS25915: BWI76_RS25915 - protein SlyX, at 5,359,169 to 5,359,387
_RS25915
BWI76_RS25920: BWI76_RS25920 - peptidylprolyl isomerase, at 5,359,447 to 5,360,034
_RS25920
Position (kb) 5358
5359 Strain fitness (log2 ratio) -2
-1
0
1 at 5357.275 kb on - strand at 5357.869 kb on - strand, within BWI76_RS25905 at 5358.166 kb on - strand at 5358.387 kb on + strand, within BWI76_RS25910 at 5358.434 kb on - strand, within BWI76_RS25910 at 5358.507 kb on + strand, within BWI76_RS25910 at 5358.607 kb on - strand, within BWI76_RS25910 at 5358.886 kb on - strand at 5358.953 kb on + strand at 5358.982 kb on - strand at 5359.006 kb on + strand at 5359.014 kb on - strand at 5359.052 kb on - strand at 5359.100 kb on + strand at 5359.146 kb on + strand at 5359.154 kb on - strand at 5359.154 kb on - strand at 5359.154 kb on - strand at 5359.194 kb on + strand, within BWI76_RS25915 at 5359.210 kb on - strand, within BWI76_RS25915 at 5359.329 kb on + strand, within BWI76_RS25915 at 5359.521 kb on - strand, within BWI76_RS25920 at 5359.585 kb on + strand, within BWI76_RS25920 at 5359.835 kb on - strand, within BWI76_RS25920
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,357,275 - +0.1 5,357,869 - BWI76_RS25905 0.87 +0.2 5,358,166 - +0.8 5,358,387 + BWI76_RS25910 0.32 -2.3 5,358,434 - BWI76_RS25910 0.37 -1.6 5,358,507 + BWI76_RS25910 0.46 -1.2 5,358,607 - BWI76_RS25910 0.58 -1.0 5,358,886 - -0.2 5,358,953 + -0.6 5,358,982 - -0.6 5,359,006 + -0.2 5,359,014 - +0.3 5,359,052 - -0.3 5,359,100 + +0.2 5,359,146 + +0.9 5,359,154 - -0.3 5,359,154 - +0.3 5,359,154 - +0.6 5,359,194 + BWI76_RS25915 0.11 -0.7 5,359,210 - BWI76_RS25915 0.19 -0.0 5,359,329 + BWI76_RS25915 0.73 -0.2 5,359,521 - BWI76_RS25920 0.13 -1.3 5,359,585 + BWI76_RS25920 0.23 -1.0 5,359,835 - BWI76_RS25920 0.66 +0.2
Or see this region's nucleotide sequence