Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25505 and BWI76_RS25510 are separated by 219 nucleotides BWI76_RS25510 and BWI76_RS25515 are separated by 77 nucleotides
BWI76_RS25505: BWI76_RS25505 - RNase E specificity factor CsrD, at 5,301,853 to 5,303,793
_RS25505
BWI76_RS25510: BWI76_RS25510 - oxidoreductase, at 5,304,013 to 5,304,987
_RS25510
BWI76_RS25515: BWI76_RS25515 - sulfoxide reductase, at 5,305,065 to 5,306,066
_RS25515
Position (kb) 5304
5305 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5303.224 kb on + strand, within BWI76_RS25505 at 5303.232 kb on - strand, within BWI76_RS25505 at 5303.386 kb on + strand, within BWI76_RS25505 at 5303.423 kb on + strand, within BWI76_RS25505 at 5303.530 kb on + strand, within BWI76_RS25505 at 5303.538 kb on - strand, within BWI76_RS25505 at 5303.538 kb on - strand at 5303.624 kb on - strand at 5303.899 kb on + strand at 5303.969 kb on - strand at 5303.996 kb on + strand at 5304.112 kb on + strand, within BWI76_RS25510 at 5304.139 kb on - strand, within BWI76_RS25510 at 5304.248 kb on - strand, within BWI76_RS25510 at 5304.364 kb on - strand, within BWI76_RS25510 at 5304.468 kb on - strand, within BWI76_RS25510 at 5304.756 kb on + strand, within BWI76_RS25510 at 5304.827 kb on - strand, within BWI76_RS25510 at 5304.972 kb on + strand at 5305.021 kb on - strand at 5305.037 kb on - strand at 5305.165 kb on + strand at 5305.165 kb on + strand at 5305.173 kb on - strand, within BWI76_RS25515 at 5305.228 kb on + strand, within BWI76_RS25515 at 5305.264 kb on - strand, within BWI76_RS25515 at 5305.346 kb on + strand, within BWI76_RS25515 at 5305.354 kb on - strand, within BWI76_RS25515 at 5305.354 kb on - strand, within BWI76_RS25515 at 5305.439 kb on + strand, within BWI76_RS25515 at 5305.620 kb on - strand, within BWI76_RS25515 at 5305.716 kb on - strand, within BWI76_RS25515 at 5305.726 kb on - strand at 5305.760 kb on - strand, within BWI76_RS25515 at 5305.837 kb on + strand, within BWI76_RS25515
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,303,224 + BWI76_RS25505 0.71 -1.5 5,303,232 - BWI76_RS25505 0.71 -1.6 5,303,386 + BWI76_RS25505 0.79 +0.6 5,303,423 + BWI76_RS25505 0.81 -1.2 5,303,530 + BWI76_RS25505 0.86 -1.6 5,303,538 - BWI76_RS25505 0.87 -4.4 5,303,538 - -1.6 5,303,624 - +1.1 5,303,899 + -3.4 5,303,969 - -0.1 5,303,996 + -0.9 5,304,112 + BWI76_RS25510 0.10 +0.9 5,304,139 - BWI76_RS25510 0.13 +0.1 5,304,248 - BWI76_RS25510 0.24 +0.6 5,304,364 - BWI76_RS25510 0.36 +0.2 5,304,468 - BWI76_RS25510 0.47 -0.1 5,304,756 + BWI76_RS25510 0.76 +1.0 5,304,827 - BWI76_RS25510 0.83 +0.6 5,304,972 + -0.0 5,305,021 - -0.1 5,305,037 - +0.2 5,305,165 + +0.4 5,305,165 + -1.0 5,305,173 - BWI76_RS25515 0.11 -0.1 5,305,228 + BWI76_RS25515 0.16 -0.4 5,305,264 - BWI76_RS25515 0.20 +0.4 5,305,346 + BWI76_RS25515 0.28 +1.7 5,305,354 - BWI76_RS25515 0.29 +0.2 5,305,354 - BWI76_RS25515 0.29 -0.3 5,305,439 + BWI76_RS25515 0.37 +0.1 5,305,620 - BWI76_RS25515 0.55 -0.3 5,305,716 - BWI76_RS25515 0.65 -0.0 5,305,726 - -1.2 5,305,760 - BWI76_RS25515 0.69 -0.2 5,305,837 + BWI76_RS25515 0.77 +0.3
Or see this region's nucleotide sequence