Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24020 and BWI76_RS24025 are separated by 133 nucleotides BWI76_RS24025 and BWI76_RS24030 are separated by 211 nucleotides
BWI76_RS24020: BWI76_RS24020 - peptidase M48, at 5,013,336 to 5,014,094
_RS24020
BWI76_RS24025: BWI76_RS24025 - agmatinase, at 5,014,228 to 5,015,148
_RS24025
BWI76_RS24030: BWI76_RS24030 - arginine decarboxylase, at 5,015,360 to 5,017,336
_RS24030
Position (kb)
5014
5015
5016 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5013.231 kb on - strand at 5013.271 kb on + strand at 5013.271 kb on + strand at 5013.271 kb on + strand at 5013.271 kb on + strand at 5013.271 kb on + strand at 5013.271 kb on + strand at 5013.279 kb on - strand at 5013.416 kb on + strand, within BWI76_RS24020 at 5013.592 kb on - strand, within BWI76_RS24020 at 5013.612 kb on - strand, within BWI76_RS24020 at 5013.614 kb on + strand, within BWI76_RS24020 at 5013.629 kb on + strand, within BWI76_RS24020 at 5013.746 kb on + strand, within BWI76_RS24020 at 5013.867 kb on + strand, within BWI76_RS24020 at 5014.053 kb on - strand at 5014.055 kb on + strand at 5014.061 kb on - strand at 5014.135 kb on + strand at 5014.135 kb on + strand at 5014.152 kb on + strand at 5014.443 kb on + strand, within BWI76_RS24025 at 5014.495 kb on + strand, within BWI76_RS24025 at 5014.605 kb on - strand, within BWI76_RS24025 at 5014.643 kb on + strand, within BWI76_RS24025 at 5014.643 kb on + strand, within BWI76_RS24025 at 5014.643 kb on + strand, within BWI76_RS24025 at 5014.651 kb on - strand, within BWI76_RS24025 at 5014.891 kb on - strand, within BWI76_RS24025 at 5015.150 kb on + strand at 5015.644 kb on + strand, within BWI76_RS24030 at 5016.002 kb on - strand, within BWI76_RS24030 at 5016.088 kb on - strand, within BWI76_RS24030
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,013,231 - -0.2 5,013,271 + +0.7 5,013,271 + +0.4 5,013,271 + -0.2 5,013,271 + -0.5 5,013,271 + +0.4 5,013,271 + +0.5 5,013,279 - +0.2 5,013,416 + BWI76_RS24020 0.11 +0.0 5,013,592 - BWI76_RS24020 0.34 +0.5 5,013,612 - BWI76_RS24020 0.36 -0.2 5,013,614 + BWI76_RS24020 0.37 +0.1 5,013,629 + BWI76_RS24020 0.39 -1.7 5,013,746 + BWI76_RS24020 0.54 -0.1 5,013,867 + BWI76_RS24020 0.70 +0.2 5,014,053 - +0.8 5,014,055 + -1.3 5,014,061 - +0.4 5,014,135 + -0.5 5,014,135 + -0.5 5,014,152 + +0.1 5,014,443 + BWI76_RS24025 0.23 -1.9 5,014,495 + BWI76_RS24025 0.29 -1.0 5,014,605 - BWI76_RS24025 0.41 -3.1 5,014,643 + BWI76_RS24025 0.45 -2.6 5,014,643 + BWI76_RS24025 0.45 -2.5 5,014,643 + BWI76_RS24025 0.45 -2.3 5,014,651 - BWI76_RS24025 0.46 -3.9 5,014,891 - BWI76_RS24025 0.72 -3.3 5,015,150 + -1.7 5,015,644 + BWI76_RS24030 0.14 -0.6 5,016,002 - BWI76_RS24030 0.32 -0.5 5,016,088 - BWI76_RS24030 0.37 -0.4
Or see this region's nucleotide sequence