Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21520

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21510 and BWI76_RS21515 are separated by 39 nucleotidesBWI76_RS21515 and BWI76_RS21520 are separated by 46 nucleotidesBWI76_RS21520 and BWI76_RS21525 are separated by 18 nucleotidesBWI76_RS21525 and BWI76_RS21530 are separated by 215 nucleotides BWI76_RS21510: BWI76_RS21510 - 50S ribosomal protein L19, at 4,505,443 to 4,505,790 _RS21510 BWI76_RS21515: BWI76_RS21515 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 4,505,830 to 4,506,597 _RS21515 BWI76_RS21520: BWI76_RS21520 - ribosome maturation factor RimM, at 4,506,644 to 4,507,192 _RS21520 BWI76_RS21525: BWI76_RS21525 - 30S ribosomal protein S16, at 4,507,211 to 4,507,459 _RS21525 BWI76_RS21530: BWI76_RS21530 - signal recognition particle protein, at 4,507,675 to 4,509,042 _RS21530 Position (kb) 4506 4507 4508Strain fitness (log2 ratio) -1 0 1at 4507.568 kb on + strandat 4507.606 kb on + strandat 4507.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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4,507,568 + +0.3
4,507,606 + -0.3
4,507,618 - +0.1

Or see this region's nucleotide sequence