Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19920

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19910 and BWI76_RS19915 are separated by 16 nucleotidesBWI76_RS19915 and BWI76_RS19920 are separated by 43 nucleotidesBWI76_RS19920 and BWI76_RS19925 are separated by 131 nucleotides BWI76_RS19910: BWI76_RS19910 - phosphotransferase RcsD, at 4,164,945 to 4,167,605 _RS19910 BWI76_RS19915: BWI76_RS19915 - DNA-binding response regulator, at 4,167,622 to 4,168,272 _RS19915 BWI76_RS19920: BWI76_RS19920 - hybrid sensor histidine kinase/response regulator, at 4,168,316 to 4,171,162 _RS19920 BWI76_RS19925: BWI76_RS19925 - DNA gyrase subunit A, at 4,171,294 to 4,173,927 _RS19925 Position (kb) 4168 4169 4170 4171 4172Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4167.377 kb on - strandat 4167.412 kb on - strandat 4167.574 kb on + strandat 4167.595 kb on - strandat 4167.654 kb on + strandat 4168.101 kb on - strand, within BWI76_RS19915at 4168.214 kb on + strandat 4168.313 kb on + strandat 4168.504 kb on - strandat 4168.804 kb on + strand, within BWI76_RS19920at 4168.890 kb on + strand, within BWI76_RS19920at 4168.993 kb on + strand, within BWI76_RS19920at 4169.341 kb on + strand, within BWI76_RS19920at 4169.349 kb on - strand, within BWI76_RS19920at 4169.471 kb on - strand, within BWI76_RS19920at 4169.550 kb on + strand, within BWI76_RS19920at 4169.624 kb on + strand, within BWI76_RS19920at 4169.645 kb on - strand, within BWI76_RS19920at 4169.663 kb on - strand, within BWI76_RS19920at 4169.778 kb on - strand, within BWI76_RS19920at 4169.893 kb on + strand, within BWI76_RS19920at 4170.277 kb on - strand, within BWI76_RS19920at 4170.510 kb on - strandat 4170.851 kb on - strand, within BWI76_RS19920at 4171.004 kb on - strandat 4171.198 kb on - strandat 4171.200 kb on + strandat 4171.260 kb on + strandat 4171.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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4,167,377 - -0.8
4,167,412 - -1.6
4,167,574 + -0.7
4,167,595 - -1.0
4,167,654 + -1.8
4,168,101 - BWI76_RS19915 0.74 -0.5
4,168,214 + -2.5
4,168,313 + -0.2
4,168,504 - -0.7
4,168,804 + BWI76_RS19920 0.17 -2.1
4,168,890 + BWI76_RS19920 0.20 -2.5
4,168,993 + BWI76_RS19920 0.24 -1.5
4,169,341 + BWI76_RS19920 0.36 -1.2
4,169,349 - BWI76_RS19920 0.36 -0.8
4,169,471 - BWI76_RS19920 0.41 -1.1
4,169,550 + BWI76_RS19920 0.43 -0.4
4,169,624 + BWI76_RS19920 0.46 -0.2
4,169,645 - BWI76_RS19920 0.47 -2.2
4,169,663 - BWI76_RS19920 0.47 -0.9
4,169,778 - BWI76_RS19920 0.51 -1.2
4,169,893 + BWI76_RS19920 0.55 -1.6
4,170,277 - BWI76_RS19920 0.69 -1.2
4,170,510 - -1.5
4,170,851 - BWI76_RS19920 0.89 -3.4
4,171,004 - -1.4
4,171,198 - +2.5
4,171,200 + -1.6
4,171,260 + -1.3
4,171,268 - +0.2

Or see this region's nucleotide sequence