Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19670 and BWI76_RS19675 are separated by 53 nucleotides BWI76_RS19675 and BWI76_RS19680 overlap by 14 nucleotides BWI76_RS19680 and BWI76_RS19685 are separated by 303 nucleotides
BWI76_RS19670: BWI76_RS19670 - S-formylglutathione hydrolase, at 4,110,283 to 4,111,119
_RS19670
BWI76_RS19675: BWI76_RS19675 - hypothetical protein, at 4,111,173 to 4,111,370
_RS19675
BWI76_RS19680: BWI76_RS19680 - catecholate siderophore receptor CirA, at 4,111,357 to 4,113,330
_RS19680
BWI76_RS19685: BWI76_RS19685 - lysine transporter, at 4,113,634 to 4,115,103
_RS19685
Position (kb)
4111
4112
4113
4114 Strain fitness (log2 ratio)
-1
0
1 at 4110.568 kb on - strand, within BWI76_RS19670 at 4110.738 kb on + strand, within BWI76_RS19670 at 4111.299 kb on - strand, within BWI76_RS19675 at 4111.431 kb on - strand at 4111.431 kb on - strand at 4111.517 kb on - strand at 4111.775 kb on + strand, within BWI76_RS19680 at 4112.021 kb on - strand, within BWI76_RS19680 at 4112.137 kb on + strand, within BWI76_RS19680 at 4112.209 kb on + strand, within BWI76_RS19680 at 4112.411 kb on + strand, within BWI76_RS19680 at 4112.419 kb on - strand, within BWI76_RS19680 at 4112.819 kb on - strand, within BWI76_RS19680 at 4112.907 kb on - strand, within BWI76_RS19680 at 4113.144 kb on - strand at 4113.154 kb on - strand at 4113.320 kb on + strand at 4113.450 kb on + strand at 4113.607 kb on + strand at 4113.697 kb on - strand at 4113.753 kb on - strand at 4113.815 kb on - strand, within BWI76_RS19685 at 4113.858 kb on + strand, within BWI76_RS19685 at 4113.935 kb on - strand, within BWI76_RS19685
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 4,110,568 - BWI76_RS19670 0.34 +0.0 4,110,738 + BWI76_RS19670 0.54 -0.5 4,111,299 - BWI76_RS19675 0.64 -0.5 4,111,431 - +0.3 4,111,431 - -0.0 4,111,517 - -0.2 4,111,775 + BWI76_RS19680 0.21 +0.2 4,112,021 - BWI76_RS19680 0.34 +0.9 4,112,137 + BWI76_RS19680 0.40 +0.1 4,112,209 + BWI76_RS19680 0.43 +0.1 4,112,411 + BWI76_RS19680 0.53 +0.2 4,112,419 - BWI76_RS19680 0.54 -0.1 4,112,819 - BWI76_RS19680 0.74 -0.3 4,112,907 - BWI76_RS19680 0.79 +0.2 4,113,144 - -0.7 4,113,154 - -0.2 4,113,320 + +0.2 4,113,450 + +0.2 4,113,607 + -0.1 4,113,697 - +0.5 4,113,753 - -0.1 4,113,815 - BWI76_RS19685 0.12 +0.6 4,113,858 + BWI76_RS19685 0.15 +1.5 4,113,935 - BWI76_RS19685 0.20 +0.6
Or see this region's nucleotide sequence