Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19680

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19670 and BWI76_RS19675 are separated by 53 nucleotidesBWI76_RS19675 and BWI76_RS19680 overlap by 14 nucleotidesBWI76_RS19680 and BWI76_RS19685 are separated by 303 nucleotides BWI76_RS19670: BWI76_RS19670 - S-formylglutathione hydrolase, at 4,110,283 to 4,111,119 _RS19670 BWI76_RS19675: BWI76_RS19675 - hypothetical protein, at 4,111,173 to 4,111,370 _RS19675 BWI76_RS19680: BWI76_RS19680 - catecholate siderophore receptor CirA, at 4,111,357 to 4,113,330 _RS19680 BWI76_RS19685: BWI76_RS19685 - lysine transporter, at 4,113,634 to 4,115,103 _RS19685 Position (kb) 4111 4112 4113 4114Strain fitness (log2 ratio) -1 0 1at 4110.568 kb on - strand, within BWI76_RS19670at 4110.738 kb on + strand, within BWI76_RS19670at 4111.299 kb on - strand, within BWI76_RS19675at 4111.431 kb on - strandat 4111.431 kb on - strandat 4111.517 kb on - strandat 4111.775 kb on + strand, within BWI76_RS19680at 4112.021 kb on - strand, within BWI76_RS19680at 4112.137 kb on + strand, within BWI76_RS19680at 4112.209 kb on + strand, within BWI76_RS19680at 4112.411 kb on + strand, within BWI76_RS19680at 4112.419 kb on - strand, within BWI76_RS19680at 4112.819 kb on - strand, within BWI76_RS19680at 4112.907 kb on - strand, within BWI76_RS19680at 4113.144 kb on - strandat 4113.154 kb on - strandat 4113.320 kb on + strandat 4113.450 kb on + strandat 4113.607 kb on + strandat 4113.697 kb on - strandat 4113.753 kb on - strandat 4113.815 kb on - strand, within BWI76_RS19685at 4113.858 kb on + strand, within BWI76_RS19685at 4113.935 kb on - strand, within BWI76_RS19685

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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4,110,568 - BWI76_RS19670 0.34 +0.0
4,110,738 + BWI76_RS19670 0.54 -0.5
4,111,299 - BWI76_RS19675 0.64 -0.5
4,111,431 - +0.3
4,111,431 - -0.0
4,111,517 - -0.2
4,111,775 + BWI76_RS19680 0.21 +0.2
4,112,021 - BWI76_RS19680 0.34 +0.9
4,112,137 + BWI76_RS19680 0.40 +0.1
4,112,209 + BWI76_RS19680 0.43 +0.1
4,112,411 + BWI76_RS19680 0.53 +0.2
4,112,419 - BWI76_RS19680 0.54 -0.1
4,112,819 - BWI76_RS19680 0.74 -0.3
4,112,907 - BWI76_RS19680 0.79 +0.2
4,113,144 - -0.7
4,113,154 - -0.2
4,113,320 + +0.2
4,113,450 + +0.2
4,113,607 + -0.1
4,113,697 - +0.5
4,113,753 - -0.1
4,113,815 - BWI76_RS19685 0.12 +0.6
4,113,858 + BWI76_RS19685 0.15 +1.5
4,113,935 - BWI76_RS19685 0.20 +0.6

Or see this region's nucleotide sequence