Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18200

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18195 and BWI76_RS18200 are separated by 100 nucleotidesBWI76_RS18200 and BWI76_RS18205 are separated by 76 nucleotidesBWI76_RS18205 and BWI76_RS18210 are separated by 230 nucleotides BWI76_RS18195: BWI76_RS18195 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 3,779,561 to 3,780,577 _RS18195 BWI76_RS18200: BWI76_RS18200 - copper homeostasis protein CutC, at 3,780,678 to 3,781,412 _RS18200 BWI76_RS18205: BWI76_RS18205 - VOC family protein, at 3,781,489 to 3,782,058 _RS18205 BWI76_RS18210: BWI76_RS18210 - arginine--tRNA ligase, at 3,782,289 to 3,784,022 _RS18210 Position (kb) 3780 3781 3782Strain fitness (log2 ratio) -3 -2 -1 0 1at 3779.775 kb on + strand, within BWI76_RS18195at 3779.814 kb on + strand, within BWI76_RS18195at 3780.107 kb on - strand, within BWI76_RS18195at 3780.317 kb on - strand, within BWI76_RS18195at 3780.878 kb on + strand, within BWI76_RS18200at 3780.878 kb on + strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3781.070 kb on - strand, within BWI76_RS18200at 3781.327 kb on + strand, within BWI76_RS18200at 3781.875 kb on + strand, within BWI76_RS18205at 3782.146 kb on + strandat 3782.184 kb on - strandat 3782.196 kb on - strandat 3782.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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3,779,775 + BWI76_RS18195 0.21 +0.1
3,779,814 + BWI76_RS18195 0.25 -0.1
3,780,107 - BWI76_RS18195 0.54 +0.1
3,780,317 - BWI76_RS18195 0.74 -0.5
3,780,878 + BWI76_RS18200 0.27 -3.1
3,780,878 + BWI76_RS18200 0.27 -1.6
3,780,886 - BWI76_RS18200 0.28 -1.5
3,780,886 - BWI76_RS18200 0.28 -0.0
3,780,886 - BWI76_RS18200 0.28 -2.5
3,780,886 - BWI76_RS18200 0.28 -2.1
3,780,886 - BWI76_RS18200 0.28 -1.0
3,780,886 - BWI76_RS18200 0.28 -3.6
3,781,070 - BWI76_RS18200 0.53 -0.2
3,781,327 + BWI76_RS18200 0.88 +0.2
3,781,875 + BWI76_RS18205 0.68 +0.7
3,782,146 + -0.5
3,782,184 - -0.4
3,782,196 - +0.9
3,782,211 + -0.4

Or see this region's nucleotide sequence