Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17560

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17555 and BWI76_RS17560 are separated by 136 nucleotidesBWI76_RS17560 and BWI76_RS17565 are separated by 64 nucleotidesBWI76_RS17565 and BWI76_RS17570 are separated by 65 nucleotides BWI76_RS17555: BWI76_RS17555 - permease, at 3,643,666 to 3,645,138 _RS17555 BWI76_RS17560: BWI76_RS17560 - formate dehydrogenase subunit alpha, at 3,645,275 to 3,647,422 _RS17560 BWI76_RS17565: BWI76_RS17565 - hypothetical protein, at 3,647,487 to 3,648,092 _RS17565 BWI76_RS17570: BWI76_RS17570 - iron-sulfur-binding protein, at 3,648,158 to 3,648,616 _RS17570 Position (kb) 3645 3646 3647 3648Strain fitness (log2 ratio) -2 -1 0 1at 3644.314 kb on + strand, within BWI76_RS17555at 3644.314 kb on + strand, within BWI76_RS17555at 3644.324 kb on + strand, within BWI76_RS17555at 3644.332 kb on - strand, within BWI76_RS17555at 3644.332 kb on - strand, within BWI76_RS17555at 3644.339 kb on + strand, within BWI76_RS17555at 3644.659 kb on + strand, within BWI76_RS17555at 3644.792 kb on + strand, within BWI76_RS17555at 3644.826 kb on + strand, within BWI76_RS17555at 3644.852 kb on + strand, within BWI76_RS17555at 3645.060 kb on + strandat 3645.132 kb on - strandat 3645.251 kb on + strandat 3645.659 kb on - strand, within BWI76_RS17560at 3645.950 kb on - strand, within BWI76_RS17560at 3646.378 kb on + strand, within BWI76_RS17560at 3646.378 kb on + strand, within BWI76_RS17560at 3646.388 kb on + strand, within BWI76_RS17560at 3646.633 kb on + strand, within BWI76_RS17560at 3647.106 kb on + strand, within BWI76_RS17560at 3647.446 kb on + strandat 3647.446 kb on + strandat 3647.446 kb on + strandat 3647.446 kb on + strandat 3647.447 kb on - strandat 3647.571 kb on - strand, within BWI76_RS17565at 3647.834 kb on + strand, within BWI76_RS17565at 3648.411 kb on - strand, within BWI76_RS17570

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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3,644,314 + BWI76_RS17555 0.44 -0.5
3,644,314 + BWI76_RS17555 0.44 -0.5
3,644,324 + BWI76_RS17555 0.45 -0.5
3,644,332 - BWI76_RS17555 0.45 -2.3
3,644,332 - BWI76_RS17555 0.45 +0.4
3,644,339 + BWI76_RS17555 0.46 -0.1
3,644,659 + BWI76_RS17555 0.67 +0.0
3,644,792 + BWI76_RS17555 0.76 +0.5
3,644,826 + BWI76_RS17555 0.79 +1.7
3,644,852 + BWI76_RS17555 0.81 -0.4
3,645,060 + +0.5
3,645,132 - -0.1
3,645,251 + +0.9
3,645,659 - BWI76_RS17560 0.18 +0.2
3,645,950 - BWI76_RS17560 0.31 -0.1
3,646,378 + BWI76_RS17560 0.51 +0.8
3,646,378 + BWI76_RS17560 0.51 -0.1
3,646,388 + BWI76_RS17560 0.52 +0.8
3,646,633 + BWI76_RS17560 0.63 +0.6
3,647,106 + BWI76_RS17560 0.85 +0.6
3,647,446 + +0.4
3,647,446 + +0.3
3,647,446 + +0.1
3,647,446 + -0.1
3,647,447 - +0.7
3,647,571 - BWI76_RS17565 0.14 +0.2
3,647,834 + BWI76_RS17565 0.57 -0.2
3,648,411 - BWI76_RS17570 0.55 -0.9

Or see this region's nucleotide sequence