Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17555 and BWI76_RS17560 are separated by 136 nucleotides BWI76_RS17560 and BWI76_RS17565 are separated by 64 nucleotides BWI76_RS17565 and BWI76_RS17570 are separated by 65 nucleotides
BWI76_RS17555: BWI76_RS17555 - permease, at 3,643,666 to 3,645,138
_RS17555
BWI76_RS17560: BWI76_RS17560 - formate dehydrogenase subunit alpha, at 3,645,275 to 3,647,422
_RS17560
BWI76_RS17565: BWI76_RS17565 - hypothetical protein, at 3,647,487 to 3,648,092
_RS17565
BWI76_RS17570: BWI76_RS17570 - iron-sulfur-binding protein, at 3,648,158 to 3,648,616
_RS17570
Position (kb)
3645
3646
3647
3648 Strain fitness (log2 ratio)
-2
-1
0
1 at 3644.314 kb on + strand, within BWI76_RS17555 at 3644.314 kb on + strand, within BWI76_RS17555 at 3644.324 kb on + strand, within BWI76_RS17555 at 3644.332 kb on - strand, within BWI76_RS17555 at 3644.332 kb on - strand, within BWI76_RS17555 at 3644.339 kb on + strand, within BWI76_RS17555 at 3644.659 kb on + strand, within BWI76_RS17555 at 3644.792 kb on + strand, within BWI76_RS17555 at 3644.826 kb on + strand, within BWI76_RS17555 at 3644.852 kb on + strand, within BWI76_RS17555 at 3645.060 kb on + strand at 3645.132 kb on - strand at 3645.251 kb on + strand at 3645.659 kb on - strand, within BWI76_RS17560 at 3645.950 kb on - strand, within BWI76_RS17560 at 3646.378 kb on + strand, within BWI76_RS17560 at 3646.378 kb on + strand, within BWI76_RS17560 at 3646.388 kb on + strand, within BWI76_RS17560 at 3646.633 kb on + strand, within BWI76_RS17560 at 3647.106 kb on + strand, within BWI76_RS17560 at 3647.446 kb on + strand at 3647.446 kb on + strand at 3647.446 kb on + strand at 3647.446 kb on + strand at 3647.447 kb on - strand at 3647.571 kb on - strand, within BWI76_RS17565 at 3647.834 kb on + strand, within BWI76_RS17565 at 3648.411 kb on - strand, within BWI76_RS17570
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 3,644,314 + BWI76_RS17555 0.44 -0.5 3,644,314 + BWI76_RS17555 0.44 -0.5 3,644,324 + BWI76_RS17555 0.45 -0.5 3,644,332 - BWI76_RS17555 0.45 -2.3 3,644,332 - BWI76_RS17555 0.45 +0.4 3,644,339 + BWI76_RS17555 0.46 -0.1 3,644,659 + BWI76_RS17555 0.67 +0.0 3,644,792 + BWI76_RS17555 0.76 +0.5 3,644,826 + BWI76_RS17555 0.79 +1.7 3,644,852 + BWI76_RS17555 0.81 -0.4 3,645,060 + +0.5 3,645,132 - -0.1 3,645,251 + +0.9 3,645,659 - BWI76_RS17560 0.18 +0.2 3,645,950 - BWI76_RS17560 0.31 -0.1 3,646,378 + BWI76_RS17560 0.51 +0.8 3,646,378 + BWI76_RS17560 0.51 -0.1 3,646,388 + BWI76_RS17560 0.52 +0.8 3,646,633 + BWI76_RS17560 0.63 +0.6 3,647,106 + BWI76_RS17560 0.85 +0.6 3,647,446 + +0.4 3,647,446 + +0.3 3,647,446 + +0.1 3,647,446 + -0.1 3,647,447 - +0.7 3,647,571 - BWI76_RS17565 0.14 +0.2 3,647,834 + BWI76_RS17565 0.57 -0.2 3,648,411 - BWI76_RS17570 0.55 -0.9
Or see this region's nucleotide sequence