Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12250 and BWI76_RS12255 are separated by 4 nucleotides BWI76_RS12255 and BWI76_RS12260 overlap by 17 nucleotides
BWI76_RS12250: BWI76_RS12250 - terminase, at 2,559,721 to 2,560,989
_RS12250
BWI76_RS12255: BWI76_RS12255 - hypothetical protein, at 2,560,994 to 2,562,418
_RS12255
BWI76_RS12260: BWI76_RS12260 - hypothetical protein, at 2,562,402 to 2,563,514
_RS12260
Position (kb)
2560
2561
2562
2563 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2560.011 kb on + strand, within BWI76_RS12250 at 2560.019 kb on - strand, within BWI76_RS12250 at 2560.054 kb on + strand, within BWI76_RS12250 at 2560.175 kb on + strand, within BWI76_RS12250 at 2560.206 kb on + strand, within BWI76_RS12250 at 2560.234 kb on + strand, within BWI76_RS12250 at 2560.249 kb on + strand, within BWI76_RS12250 at 2560.314 kb on + strand, within BWI76_RS12250 at 2560.340 kb on - strand, within BWI76_RS12250 at 2560.340 kb on - strand, within BWI76_RS12250 at 2560.340 kb on - strand, within BWI76_RS12250 at 2560.384 kb on - strand, within BWI76_RS12250 at 2560.441 kb on + strand, within BWI76_RS12250 at 2560.469 kb on - strand, within BWI76_RS12250 at 2560.502 kb on + strand, within BWI76_RS12250 at 2560.510 kb on - strand, within BWI76_RS12250 at 2560.533 kb on + strand, within BWI76_RS12250 at 2560.540 kb on - strand, within BWI76_RS12250 at 2560.730 kb on + strand, within BWI76_RS12250 at 2560.776 kb on + strand, within BWI76_RS12250 at 2560.840 kb on - strand, within BWI76_RS12250 at 2561.024 kb on - strand at 2561.149 kb on + strand, within BWI76_RS12255 at 2561.171 kb on + strand, within BWI76_RS12255 at 2561.186 kb on - strand, within BWI76_RS12255 at 2561.220 kb on - strand, within BWI76_RS12255 at 2561.232 kb on - strand, within BWI76_RS12255 at 2561.237 kb on + strand, within BWI76_RS12255 at 2561.237 kb on + strand, within BWI76_RS12255 at 2561.247 kb on + strand, within BWI76_RS12255 at 2561.446 kb on + strand, within BWI76_RS12255 at 2561.446 kb on + strand, within BWI76_RS12255 at 2561.454 kb on - strand, within BWI76_RS12255 at 2561.477 kb on - strand, within BWI76_RS12255 at 2561.650 kb on + strand, within BWI76_RS12255 at 2561.717 kb on + strand, within BWI76_RS12255 at 2561.783 kb on - strand, within BWI76_RS12255 at 2561.784 kb on + strand, within BWI76_RS12255 at 2561.794 kb on + strand, within BWI76_RS12255 at 2562.083 kb on + strand, within BWI76_RS12255 at 2562.083 kb on + strand, within BWI76_RS12255 at 2562.091 kb on - strand, within BWI76_RS12255 at 2562.382 kb on + strand at 2562.390 kb on - strand at 2562.390 kb on - strand at 2562.607 kb on - strand, within BWI76_RS12260 at 2562.931 kb on - strand, within BWI76_RS12260 at 2563.018 kb on - strand, within BWI76_RS12260 at 2563.113 kb on - strand, within BWI76_RS12260 at 2563.173 kb on - strand, within BWI76_RS12260
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 2,560,011 + BWI76_RS12250 0.23 -0.2 2,560,019 - BWI76_RS12250 0.23 -1.1 2,560,054 + BWI76_RS12250 0.26 -1.2 2,560,175 + BWI76_RS12250 0.36 -2.7 2,560,206 + BWI76_RS12250 0.38 -0.7 2,560,234 + BWI76_RS12250 0.40 -0.2 2,560,249 + BWI76_RS12250 0.42 -0.5 2,560,314 + BWI76_RS12250 0.47 -0.7 2,560,340 - BWI76_RS12250 0.49 -0.3 2,560,340 - BWI76_RS12250 0.49 -0.9 2,560,340 - BWI76_RS12250 0.49 -1.0 2,560,384 - BWI76_RS12250 0.52 -0.8 2,560,441 + BWI76_RS12250 0.57 -2.5 2,560,469 - BWI76_RS12250 0.59 -1.2 2,560,502 + BWI76_RS12250 0.62 -1.3 2,560,510 - BWI76_RS12250 0.62 -1.4 2,560,533 + BWI76_RS12250 0.64 -0.7 2,560,540 - BWI76_RS12250 0.65 -1.4 2,560,730 + BWI76_RS12250 0.80 +0.2 2,560,776 + BWI76_RS12250 0.83 -1.1 2,560,840 - BWI76_RS12250 0.88 -0.6 2,561,024 - -1.1 2,561,149 + BWI76_RS12255 0.11 -1.4 2,561,171 + BWI76_RS12255 0.12 -0.9 2,561,186 - BWI76_RS12255 0.13 -1.1 2,561,220 - BWI76_RS12255 0.16 -2.2 2,561,232 - BWI76_RS12255 0.17 -1.5 2,561,237 + BWI76_RS12255 0.17 -1.3 2,561,237 + BWI76_RS12255 0.17 -1.4 2,561,247 + BWI76_RS12255 0.18 -1.1 2,561,446 + BWI76_RS12255 0.32 -0.5 2,561,446 + BWI76_RS12255 0.32 -1.2 2,561,454 - BWI76_RS12255 0.32 -1.3 2,561,477 - BWI76_RS12255 0.34 -1.4 2,561,650 + BWI76_RS12255 0.46 -2.1 2,561,717 + BWI76_RS12255 0.51 -1.1 2,561,783 - BWI76_RS12255 0.55 -1.5 2,561,784 + BWI76_RS12255 0.55 -1.6 2,561,794 + BWI76_RS12255 0.56 +1.2 2,562,083 + BWI76_RS12255 0.76 -0.3 2,562,083 + BWI76_RS12255 0.76 -0.6 2,562,091 - BWI76_RS12255 0.77 -1.5 2,562,382 + -0.9 2,562,390 - -4.7 2,562,390 - +0.1 2,562,607 - BWI76_RS12260 0.18 -0.8 2,562,931 - BWI76_RS12260 0.48 -0.1 2,563,018 - BWI76_RS12260 0.55 +0.0 2,563,113 - BWI76_RS12260 0.64 -0.3 2,563,173 - BWI76_RS12260 0.69 -0.5
Or see this region's nucleotide sequence