Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06875 and BWI76_RS06880 are separated by 322 nucleotides BWI76_RS06880 and BWI76_RS06885 are separated by 1 nucleotides BWI76_RS06885 and BWI76_RS06890 are separated by 34 nucleotides
BWI76_RS06875: BWI76_RS06875 - conjugal transfer protein TraB, at 1,444,037 to 1,444,831
_RS06875
BWI76_RS06880: BWI76_RS06880 - biopolymer transport protein ExbD/TolR, at 1,445,154 to 1,445,561
_RS06880
BWI76_RS06885: BWI76_RS06885 - TonB family protein, at 1,445,563 to 1,446,306
_RS06885
BWI76_RS06890: BWI76_RS06890 - TonB-dependent receptor, at 1,446,341 to 1,448,581
_RS06890
Position (kb)
1445
1446
1447 Strain fitness (log2 ratio)
-1
0
1 at 1444.567 kb on - strand, within BWI76_RS06875 at 1444.716 kb on - strand, within BWI76_RS06875 at 1444.726 kb on + strand, within BWI76_RS06875 at 1444.726 kb on + strand, within BWI76_RS06875 at 1444.734 kb on - strand, within BWI76_RS06875 at 1444.740 kb on + strand, within BWI76_RS06875 at 1444.758 kb on - strand at 1444.836 kb on + strand at 1445.279 kb on - strand, within BWI76_RS06880 at 1445.413 kb on + strand, within BWI76_RS06880 at 1445.454 kb on + strand, within BWI76_RS06880 at 1446.112 kb on - strand, within BWI76_RS06885 at 1446.191 kb on - strand, within BWI76_RS06885 at 1446.519 kb on - strand at 1446.596 kb on + strand, within BWI76_RS06890 at 1446.622 kb on + strand, within BWI76_RS06890 at 1446.758 kb on + strand, within BWI76_RS06890 at 1446.834 kb on + strand, within BWI76_RS06890 at 1446.884 kb on - strand, within BWI76_RS06890 at 1446.902 kb on + strand, within BWI76_RS06890 at 1446.912 kb on - strand, within BWI76_RS06890 at 1446.912 kb on - strand, within BWI76_RS06890 at 1447.069 kb on - strand, within BWI76_RS06890 at 1447.087 kb on + strand, within BWI76_RS06890 at 1447.107 kb on - strand, within BWI76_RS06890 at 1447.224 kb on + strand, within BWI76_RS06890 at 1447.236 kb on + strand, within BWI76_RS06890 at 1447.244 kb on - strand, within BWI76_RS06890 at 1447.244 kb on - strand, within BWI76_RS06890
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 1,444,567 - BWI76_RS06875 0.67 -0.8 1,444,716 - BWI76_RS06875 0.85 +0.4 1,444,726 + BWI76_RS06875 0.87 +0.7 1,444,726 + BWI76_RS06875 0.87 -0.3 1,444,734 - BWI76_RS06875 0.88 +0.2 1,444,740 + BWI76_RS06875 0.88 -0.0 1,444,758 - -0.3 1,444,836 + -0.4 1,445,279 - BWI76_RS06880 0.31 -0.2 1,445,413 + BWI76_RS06880 0.63 +0.0 1,445,454 + BWI76_RS06880 0.74 -0.2 1,446,112 - BWI76_RS06885 0.74 -0.2 1,446,191 - BWI76_RS06885 0.84 -0.0 1,446,519 - -0.0 1,446,596 + BWI76_RS06890 0.11 +1.5 1,446,622 + BWI76_RS06890 0.13 -0.6 1,446,758 + BWI76_RS06890 0.19 +0.1 1,446,834 + BWI76_RS06890 0.22 +0.4 1,446,884 - BWI76_RS06890 0.24 -0.2 1,446,902 + BWI76_RS06890 0.25 +0.1 1,446,912 - BWI76_RS06890 0.25 -0.1 1,446,912 - BWI76_RS06890 0.25 +0.2 1,447,069 - BWI76_RS06890 0.32 -0.4 1,447,087 + BWI76_RS06890 0.33 -0.2 1,447,107 - BWI76_RS06890 0.34 +1.0 1,447,224 + BWI76_RS06890 0.39 +0.0 1,447,236 + BWI76_RS06890 0.40 -0.2 1,447,244 - BWI76_RS06890 0.40 +0.6 1,447,244 - BWI76_RS06890 0.40 -0.4
Or see this region's nucleotide sequence