Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04465 and BWI76_RS04470 are separated by 18 nucleotides BWI76_RS04470 and BWI76_RS04475 are separated by 138 nucleotides
BWI76_RS04465: BWI76_RS04465 - carbamoyl-phosphate synthase small subunit, at 922,546 to 923,694
_RS04465
BWI76_RS04470: BWI76_RS04470 - carbamoyl phosphate synthase large subunit, at 923,713 to 926,937
_RS04470
BWI76_RS04475: BWI76_RS04475 - ROK family protein, at 927,076 to 927,960
_RS04475
Position (kb) 923
924
925
926
927 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 922.828 kb on + strand, within BWI76_RS04465 at 922.836 kb on + strand, within BWI76_RS04465 at 922.836 kb on - strand, within BWI76_RS04465 at 922.897 kb on - strand, within BWI76_RS04465 at 923.052 kb on - strand, within BWI76_RS04465 at 923.206 kb on + strand, within BWI76_RS04465 at 923.623 kb on - strand at 923.628 kb on - strand at 923.794 kb on - strand at 923.808 kb on + strand at 923.816 kb on - strand at 923.855 kb on + strand at 923.862 kb on + strand at 923.879 kb on - strand at 923.995 kb on + strand at 923.995 kb on + strand at 924.003 kb on - strand at 924.256 kb on + strand, within BWI76_RS04470 at 924.264 kb on - strand at 924.575 kb on - strand, within BWI76_RS04470 at 924.717 kb on + strand, within BWI76_RS04470 at 924.748 kb on - strand, within BWI76_RS04470 at 924.751 kb on - strand, within BWI76_RS04470 at 924.760 kb on - strand, within BWI76_RS04470 at 924.914 kb on + strand, within BWI76_RS04470 at 925.097 kb on + strand, within BWI76_RS04470 at 925.338 kb on + strand, within BWI76_RS04470 at 925.346 kb on - strand, within BWI76_RS04470 at 925.547 kb on + strand, within BWI76_RS04470 at 925.706 kb on + strand, within BWI76_RS04470 at 925.931 kb on - strand, within BWI76_RS04470 at 926.164 kb on - strand, within BWI76_RS04470 at 926.332 kb on - strand, within BWI76_RS04470 at 926.473 kb on + strand, within BWI76_RS04470 at 926.481 kb on - strand, within BWI76_RS04470 at 926.610 kb on + strand, within BWI76_RS04470 at 926.817 kb on + strand at 926.817 kb on + strand at 926.903 kb on - strand at 927.074 kb on - strand at 927.433 kb on + strand, within BWI76_RS04475 at 927.433 kb on + strand, within BWI76_RS04475 at 927.441 kb on - strand, within BWI76_RS04475 at 927.613 kb on - strand, within BWI76_RS04475 at 927.747 kb on + strand, within BWI76_RS04475 at 927.752 kb on + strand, within BWI76_RS04475 at 927.815 kb on + strand, within BWI76_RS04475 at 927.823 kb on - strand, within BWI76_RS04475 at 927.907 kb on + strand at 927.910 kb on - strand at 927.915 kb on - strand at 927.922 kb on + strand at 927.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 922,828 + BWI76_RS04465 0.25 -7.3 922,836 + BWI76_RS04465 0.25 -8.1 922,836 - BWI76_RS04465 0.25 -6.3 922,897 - BWI76_RS04465 0.31 -2.2 923,052 - BWI76_RS04465 0.44 -5.6 923,206 + BWI76_RS04465 0.57 -4.4 923,623 - -5.1 923,628 - -7.4 923,794 - -7.0 923,808 + -5.6 923,816 - -3.3 923,855 + -4.7 923,862 + -6.7 923,879 - -7.5 923,995 + -4.3 923,995 + -4.0 924,003 - -7.5 924,256 + BWI76_RS04470 0.17 -4.8 924,264 - -3.7 924,575 - BWI76_RS04470 0.27 -6.3 924,717 + BWI76_RS04470 0.31 -4.1 924,748 - BWI76_RS04470 0.32 -5.9 924,751 - BWI76_RS04470 0.32 -5.1 924,760 - BWI76_RS04470 0.32 -7.2 924,914 + BWI76_RS04470 0.37 -6.6 925,097 + BWI76_RS04470 0.43 -7.3 925,338 + BWI76_RS04470 0.50 -3.5 925,346 - BWI76_RS04470 0.51 -7.7 925,547 + BWI76_RS04470 0.57 -5.2 925,706 + BWI76_RS04470 0.62 -7.3 925,931 - BWI76_RS04470 0.69 -7.2 926,164 - BWI76_RS04470 0.76 -7.5 926,332 - BWI76_RS04470 0.81 -8.5 926,473 + BWI76_RS04470 0.86 -3.5 926,481 - BWI76_RS04470 0.86 -5.7 926,610 + BWI76_RS04470 0.90 -7.4 926,817 + -5.6 926,817 + -5.5 926,903 - -7.3 927,074 - +0.2 927,433 + BWI76_RS04475 0.40 -1.0 927,433 + BWI76_RS04475 0.40 -0.6 927,441 - BWI76_RS04475 0.41 -0.0 927,613 - BWI76_RS04475 0.61 -0.2 927,747 + BWI76_RS04475 0.76 -1.1 927,752 + BWI76_RS04475 0.76 +0.0 927,815 + BWI76_RS04475 0.84 -0.0 927,823 - BWI76_RS04475 0.84 +0.3 927,907 + +0.2 927,910 - -0.4 927,915 - -0.2 927,922 + +0.3 927,930 - -1.7
Or see this region's nucleotide sequence