Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00795

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00790 and BWI76_RS00795 are separated by 39 nucleotidesBWI76_RS00795 and BWI76_RS00800 are separated by 91 nucleotides BWI76_RS00790: BWI76_RS00790 - bifunctional aspartokinase II/homoserine dehydrogenase II, at 160,976 to 163,408 _RS00790 BWI76_RS00795: BWI76_RS00795 - carboxymuconolactone decarboxylase, at 163,448 to 163,819 _RS00795 BWI76_RS00800: BWI76_RS00800 - LysR family transcriptional regulator, at 163,911 to 164,816 _RS00800 Position (kb) 163 164Strain fitness (log2 ratio) -1 0 1 2at 162.769 kb on + strand, within BWI76_RS00790at 162.812 kb on - strand, within BWI76_RS00790at 162.843 kb on + strand, within BWI76_RS00790at 162.911 kb on - strand, within BWI76_RS00790at 163.095 kb on + strand, within BWI76_RS00790at 163.183 kb on + strandat 163.191 kb on - strandat 163.379 kb on + strandat 163.613 kb on - strand, within BWI76_RS00795at 163.650 kb on - strand, within BWI76_RS00795at 163.740 kb on - strand, within BWI76_RS00795at 163.778 kb on + strand, within BWI76_RS00795at 163.799 kb on + strandat 163.822 kb on - strandat 163.839 kb on - strandat 163.866 kb on + strandat 163.889 kb on - strandat 164.060 kb on + strandat 164.154 kb on + strand, within BWI76_RS00800at 164.233 kb on + strand, within BWI76_RS00800at 164.241 kb on - strand, within BWI76_RS00800at 164.241 kb on - strand, within BWI76_RS00800at 164.464 kb on + strand, within BWI76_RS00800at 164.734 kb on - strandat 164.739 kb on - strandat 164.745 kb on - strandat 164.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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162,769 + BWI76_RS00790 0.74 -1.6
162,812 - BWI76_RS00790 0.75 -1.2
162,843 + BWI76_RS00790 0.77 +0.1
162,911 - BWI76_RS00790 0.80 -0.7
163,095 + BWI76_RS00790 0.87 -0.6
163,183 + +0.8
163,191 - +0.6
163,379 + +0.6
163,613 - BWI76_RS00795 0.44 -0.4
163,650 - BWI76_RS00795 0.54 -0.6
163,740 - BWI76_RS00795 0.78 -0.9
163,778 + BWI76_RS00795 0.89 -0.6
163,799 + -0.4
163,822 - +0.4
163,839 - +0.5
163,866 + -0.0
163,889 - +0.3
164,060 + -0.8
164,154 + BWI76_RS00800 0.27 -0.5
164,233 + BWI76_RS00800 0.36 +0.4
164,241 - BWI76_RS00800 0.36 +0.1
164,241 - BWI76_RS00800 0.36 -0.1
164,464 + BWI76_RS00800 0.61 -0.6
164,734 - -0.3
164,739 - +2.6
164,745 - -0.1
164,791 - -0.8

Or see this region's nucleotide sequence