Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00715 and BWI76_RS00720 overlap by 4 nucleotides BWI76_RS00720 and BWI76_RS00725 are separated by 149 nucleotides BWI76_RS00725 and BWI76_RS00730 are separated by 149 nucleotides
BWI76_RS00715: BWI76_RS00715 - two-component sensor histidine kinase, at 145,529 to 146,902
_RS00715
BWI76_RS00720: BWI76_RS00720 - DNA-binding response regulator, at 146,899 to 147,597
_RS00720
BWI76_RS00725: BWI76_RS00725 - periplasmic repressor CpxP, at 147,747 to 148,250
_RS00725
BWI76_RS00730: BWI76_RS00730 - cation-efflux pump FieF, at 148,400 to 149,296
_RS00730
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 146.062 kb on + strand, within BWI76_RS00715 at 146.068 kb on + strand, within BWI76_RS00715 at 146.146 kb on - strand at 146.232 kb on - strand, within BWI76_RS00715 at 146.232 kb on - strand, within BWI76_RS00715 at 146.345 kb on - strand, within BWI76_RS00715 at 146.348 kb on + strand, within BWI76_RS00715 at 146.554 kb on + strand, within BWI76_RS00715 at 147.037 kb on + strand, within BWI76_RS00720 at 147.129 kb on + strand, within BWI76_RS00720 at 147.356 kb on - strand, within BWI76_RS00720 at 147.524 kb on - strand, within BWI76_RS00720 at 147.661 kb on + strand at 147.669 kb on - strand at 147.669 kb on - strand at 147.861 kb on - strand, within BWI76_RS00725 at 147.897 kb on - strand, within BWI76_RS00725 at 148.215 kb on + strand at 148.368 kb on + strand at 148.411 kb on - strand at 148.416 kb on - strand at 148.431 kb on - strand at 148.453 kb on + strand at 148.500 kb on - strand, within BWI76_RS00730 at 148.503 kb on - strand, within BWI76_RS00730 at 148.575 kb on - strand, within BWI76_RS00730
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 146,062 + BWI76_RS00715 0.39 -0.4 146,068 + BWI76_RS00715 0.39 -2.1 146,146 - -0.8 146,232 - BWI76_RS00715 0.51 -2.4 146,232 - BWI76_RS00715 0.51 -2.2 146,345 - BWI76_RS00715 0.59 -0.8 146,348 + BWI76_RS00715 0.60 -1.1 146,554 + BWI76_RS00715 0.75 +0.4 147,037 + BWI76_RS00720 0.20 -3.4 147,129 + BWI76_RS00720 0.33 -2.8 147,356 - BWI76_RS00720 0.65 +0.8 147,524 - BWI76_RS00720 0.89 -1.6 147,661 + +0.4 147,669 - +0.7 147,669 - +0.3 147,861 - BWI76_RS00725 0.23 +0.2 147,897 - BWI76_RS00725 0.30 -0.1 148,215 + -0.5 148,368 + +0.6 148,411 - -1.0 148,416 - -2.4 148,431 - -0.9 148,453 + -0.1 148,500 - BWI76_RS00730 0.11 +0.2 148,503 - BWI76_RS00730 0.11 -0.3 148,575 - BWI76_RS00730 0.20 +0.4
Or see this region's nucleotide sequence