Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00585 and BWI76_RS00590 are separated by 15 nucleotides BWI76_RS00590 and BWI76_RS00595 overlap by 4 nucleotides BWI76_RS00595 and BWI76_RS00600 are separated by 106 nucleotides
BWI76_RS00585: BWI76_RS00585 - dihydrodipicolinate synthase family protein, at 116,917 to 117,840
_RS00585
BWI76_RS00590: BWI76_RS00590 - hypothetical protein, at 117,856 to 118,347
_RS00590
BWI76_RS00595: BWI76_RS00595 - MFS transporter, at 118,344 to 119,621
_RS00595
BWI76_RS00600: BWI76_RS00600 - LacI family transcriptional regulator, at 119,728 to 120,723
_RS00600
Position (kb) 118
119
120 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 117.431 kb on + strand, within BWI76_RS00585 at 117.444 kb on - strand, within BWI76_RS00585 at 117.451 kb on - strand, within BWI76_RS00585 at 117.488 kb on - strand, within BWI76_RS00585 at 117.542 kb on + strand, within BWI76_RS00585 at 117.564 kb on + strand, within BWI76_RS00585 at 117.577 kb on + strand, within BWI76_RS00585 at 117.795 kb on + strand at 117.801 kb on + strand at 117.829 kb on + strand at 117.859 kb on + strand at 117.891 kb on + strand at 117.899 kb on - strand at 118.113 kb on - strand, within BWI76_RS00590 at 118.290 kb on - strand, within BWI76_RS00590 at 118.448 kb on - strand at 118.450 kb on + strand at 118.458 kb on - strand at 118.524 kb on + strand, within BWI76_RS00595 at 118.623 kb on + strand, within BWI76_RS00595 at 118.631 kb on + strand, within BWI76_RS00595 at 118.644 kb on - strand, within BWI76_RS00595 at 118.757 kb on - strand, within BWI76_RS00595 at 118.914 kb on + strand, within BWI76_RS00595 at 118.951 kb on + strand, within BWI76_RS00595 at 118.970 kb on - strand, within BWI76_RS00595 at 118.999 kb on - strand, within BWI76_RS00595 at 119.012 kb on + strand, within BWI76_RS00595 at 119.120 kb on + strand, within BWI76_RS00595 at 119.151 kb on - strand, within BWI76_RS00595 at 119.242 kb on - strand, within BWI76_RS00595 at 119.259 kb on - strand, within BWI76_RS00595 at 119.274 kb on + strand, within BWI76_RS00595 at 119.435 kb on + strand, within BWI76_RS00595 at 119.482 kb on - strand, within BWI76_RS00595 at 119.850 kb on - strand, within BWI76_RS00600 at 119.890 kb on - strand, within BWI76_RS00600 at 120.058 kb on - strand, within BWI76_RS00600 at 120.072 kb on - strand, within BWI76_RS00600 at 120.072 kb on - strand, within BWI76_RS00600 at 120.118 kb on - strand, within BWI76_RS00600 at 120.418 kb on - strand, within BWI76_RS00600 at 120.613 kb on + strand, within BWI76_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 117,431 + BWI76_RS00585 0.56 -0.1 117,444 - BWI76_RS00585 0.57 -0.7 117,451 - BWI76_RS00585 0.58 -0.2 117,488 - BWI76_RS00585 0.62 +0.1 117,542 + BWI76_RS00585 0.68 +0.7 117,564 + BWI76_RS00585 0.70 +1.1 117,577 + BWI76_RS00585 0.71 -0.8 117,795 + -0.0 117,801 + -0.3 117,829 + +0.4 117,859 + +0.2 117,891 + +0.4 117,899 - -0.2 118,113 - BWI76_RS00590 0.52 +0.2 118,290 - BWI76_RS00590 0.88 -0.3 118,448 - +0.0 118,450 + +0.1 118,458 - +0.4 118,524 + BWI76_RS00595 0.14 -0.3 118,623 + BWI76_RS00595 0.22 -0.2 118,631 + BWI76_RS00595 0.22 +1.3 118,644 - BWI76_RS00595 0.23 +0.7 118,757 - BWI76_RS00595 0.32 +1.5 118,914 + BWI76_RS00595 0.45 +0.1 118,951 + BWI76_RS00595 0.47 +1.9 118,970 - BWI76_RS00595 0.49 -0.1 118,999 - BWI76_RS00595 0.51 -0.3 119,012 + BWI76_RS00595 0.52 +0.5 119,120 + BWI76_RS00595 0.61 +0.3 119,151 - BWI76_RS00595 0.63 +1.4 119,242 - BWI76_RS00595 0.70 +0.3 119,259 - BWI76_RS00595 0.72 -0.6 119,274 + BWI76_RS00595 0.73 +1.1 119,435 + BWI76_RS00595 0.85 -0.1 119,482 - BWI76_RS00595 0.89 +1.1 119,850 - BWI76_RS00600 0.12 -2.5 119,890 - BWI76_RS00600 0.16 -3.5 120,058 - BWI76_RS00600 0.33 -4.4 120,072 - BWI76_RS00600 0.35 -2.6 120,072 - BWI76_RS00600 0.35 -4.3 120,118 - BWI76_RS00600 0.39 -3.6 120,418 - BWI76_RS00600 0.69 -2.5 120,613 + BWI76_RS00600 0.89 -2.6
Or see this region's nucleotide sequence