Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27505

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS27500 and BWI76_RS27505 are separated by 150 nucleotidesBWI76_RS27505 and BWI76_RS27510 are separated by 448 nucleotides BWI76_RS27500: BWI76_RS27500 - sulfate transporter subunit, at 5,705,614 to 5,706,603 _RS27500 BWI76_RS27505: BWI76_RS27505 - septal ring assembly protein ZapB, at 5,706,754 to 5,706,993 _RS27505 BWI76_RS27510: BWI76_RS27510 - aquaporin, at 5,707,442 to 5,708,293 _RS27510 Position (kb) 5706 5707Strain fitness (log2 ratio) -3 -2 -1 0 1at 5705.755 kb on - strand, within BWI76_RS27500at 5705.771 kb on - strand, within BWI76_RS27500at 5705.788 kb on + strand, within BWI76_RS27500at 5705.812 kb on - strand, within BWI76_RS27500at 5706.053 kb on + strand, within BWI76_RS27500at 5706.122 kb on - strand, within BWI76_RS27500at 5706.273 kb on - strand, within BWI76_RS27500at 5706.354 kb on + strand, within BWI76_RS27500at 5706.354 kb on + strand, within BWI76_RS27500at 5706.361 kb on + strand, within BWI76_RS27500at 5706.362 kb on - strand, within BWI76_RS27500at 5706.584 kb on - strandat 5706.585 kb on - strandat 5706.585 kb on - strandat 5706.603 kb on + strandat 5706.624 kb on + strandat 5706.635 kb on + strandat 5706.712 kb on + strandat 5706.717 kb on + strandat 5706.772 kb on + strandat 5706.780 kb on - strand, within BWI76_RS27505at 5706.810 kb on - strand, within BWI76_RS27505at 5706.866 kb on - strand, within BWI76_RS27505at 5706.930 kb on - strand, within BWI76_RS27505at 5706.989 kb on - strandat 5706.994 kb on + strandat 5706.994 kb on + strandat 5707.012 kb on - strandat 5707.087 kb on - strandat 5707.092 kb on - strandat 5707.534 kb on + strand, within BWI76_RS27510at 5707.625 kb on - strand, within BWI76_RS27510at 5707.647 kb on - strand, within BWI76_RS27510at 5707.656 kb on + strand, within BWI76_RS27510at 5707.711 kb on - strand, within BWI76_RS27510at 5707.793 kb on + strand, within BWI76_RS27510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
remove
5,705,755 - BWI76_RS27500 0.14 -0.3
5,705,771 - BWI76_RS27500 0.16 -1.0
5,705,788 + BWI76_RS27500 0.18 +0.4
5,705,812 - BWI76_RS27500 0.20 +0.2
5,706,053 + BWI76_RS27500 0.44 +0.9
5,706,122 - BWI76_RS27500 0.51 -0.8
5,706,273 - BWI76_RS27500 0.67 -0.3
5,706,354 + BWI76_RS27500 0.75 +0.1
5,706,354 + BWI76_RS27500 0.75 +1.0
5,706,361 + BWI76_RS27500 0.75 +0.6
5,706,362 - BWI76_RS27500 0.76 -0.5
5,706,584 - -0.2
5,706,585 - +0.6
5,706,585 - -0.3
5,706,603 + -0.2
5,706,624 + -0.6
5,706,635 + +0.3
5,706,712 + -0.2
5,706,717 + -0.4
5,706,772 + -1.1
5,706,780 - BWI76_RS27505 0.11 -1.4
5,706,810 - BWI76_RS27505 0.23 -2.8
5,706,866 - BWI76_RS27505 0.47 -1.2
5,706,930 - BWI76_RS27505 0.73 -2.2
5,706,989 - -2.0
5,706,994 + +0.3
5,706,994 + -0.4
5,707,012 - -0.4
5,707,087 - -0.2
5,707,092 - -0.4
5,707,534 + BWI76_RS27510 0.11 -0.2
5,707,625 - BWI76_RS27510 0.21 +0.4
5,707,647 - BWI76_RS27510 0.24 +1.1
5,707,656 + BWI76_RS27510 0.25 -0.2
5,707,711 - BWI76_RS27510 0.32 -0.2
5,707,793 + BWI76_RS27510 0.41 -1.5

Or see this region's nucleotide sequence