Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26415 and BWI76_RS26420 are separated by 142 nucleotides BWI76_RS26420 and BWI76_RS26425 are separated by 78 nucleotides BWI76_RS26425 and BWI76_RS26430 are separated by 211 nucleotides BWI76_RS26430 and BWI76_RS26435 are separated by 166 nucleotides
BWI76_RS26415: BWI76_RS26415 - hypothetical protein, at 5,467,625 to 5,467,984
_RS26415
BWI76_RS26420: BWI76_RS26420 - lysoplasmalogenase, at 5,468,127 to 5,468,753
_RS26420
BWI76_RS26425: BWI76_RS26425 - zinc/cadmium/mercury/lead-transporting ATPase, at 5,468,832 to 5,471,036
_RS26425
BWI76_RS26430: BWI76_RS26430 - sulfurtransferase TusA, at 5,471,248 to 5,471,493
_RS26430
BWI76_RS26435: BWI76_RS26435 - hypothetical protein, at 5,471,660 to 5,472,325
_RS26435
Position (kb)
5468
5469
5470
5471
5472 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5468.015 kb on + strand at 5468.165 kb on + strand at 5468.165 kb on + strand at 5468.173 kb on - strand at 5468.173 kb on - strand at 5468.227 kb on + strand, within BWI76_RS26420 at 5468.325 kb on + strand, within BWI76_RS26420 at 5468.342 kb on - strand, within BWI76_RS26420 at 5468.354 kb on + strand, within BWI76_RS26420 at 5468.393 kb on - strand at 5468.398 kb on - strand, within BWI76_RS26420 at 5468.498 kb on + strand, within BWI76_RS26420 at 5468.713 kb on - strand at 5469.121 kb on - strand, within BWI76_RS26425 at 5469.482 kb on + strand, within BWI76_RS26425 at 5469.583 kb on + strand, within BWI76_RS26425 at 5469.790 kb on + strand, within BWI76_RS26425 at 5469.823 kb on + strand, within BWI76_RS26425 at 5469.934 kb on - strand, within BWI76_RS26425 at 5469.969 kb on - strand, within BWI76_RS26425 at 5470.059 kb on - strand, within BWI76_RS26425 at 5470.088 kb on + strand, within BWI76_RS26425 at 5470.088 kb on + strand, within BWI76_RS26425 at 5470.096 kb on - strand, within BWI76_RS26425 at 5470.096 kb on - strand, within BWI76_RS26425 at 5470.420 kb on + strand, within BWI76_RS26425 at 5470.799 kb on - strand, within BWI76_RS26425 at 5470.834 kb on - strand at 5470.835 kb on - strand at 5470.992 kb on + strand at 5470.992 kb on + strand at 5471.171 kb on + strand at 5471.530 kb on - strand at 5471.561 kb on - strand at 5471.620 kb on - strand at 5471.706 kb on - strand at 5471.889 kb on + strand, within BWI76_RS26435 at 5471.889 kb on + strand, within BWI76_RS26435 at 5471.907 kb on - strand, within BWI76_RS26435 at 5471.926 kb on + strand, within BWI76_RS26435
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,468,015 + -0.3 5,468,165 + +0.1 5,468,165 + -1.3 5,468,173 - -1.3 5,468,173 - -0.1 5,468,227 + BWI76_RS26420 0.16 +0.0 5,468,325 + BWI76_RS26420 0.32 -0.4 5,468,342 - BWI76_RS26420 0.34 -0.6 5,468,354 + BWI76_RS26420 0.36 -0.4 5,468,393 - +0.3 5,468,398 - BWI76_RS26420 0.43 -0.2 5,468,498 + BWI76_RS26420 0.59 -0.6 5,468,713 - -0.1 5,469,121 - BWI76_RS26425 0.13 -1.2 5,469,482 + BWI76_RS26425 0.29 -0.8 5,469,583 + BWI76_RS26425 0.34 -1.5 5,469,790 + BWI76_RS26425 0.43 -1.1 5,469,823 + BWI76_RS26425 0.45 -1.6 5,469,934 - BWI76_RS26425 0.50 -0.5 5,469,969 - BWI76_RS26425 0.52 -1.9 5,470,059 - BWI76_RS26425 0.56 -3.8 5,470,088 + BWI76_RS26425 0.57 -0.8 5,470,088 + BWI76_RS26425 0.57 -0.4 5,470,096 - BWI76_RS26425 0.57 -1.1 5,470,096 - BWI76_RS26425 0.57 -1.5 5,470,420 + BWI76_RS26425 0.72 -1.1 5,470,799 - BWI76_RS26425 0.89 -1.4 5,470,834 - -1.4 5,470,835 - -1.1 5,470,992 + -1.5 5,470,992 + -0.8 5,471,171 + -0.6 5,471,530 - -0.4 5,471,561 - +0.8 5,471,620 - +0.2 5,471,706 - -0.5 5,471,889 + BWI76_RS26435 0.34 -0.4 5,471,889 + BWI76_RS26435 0.34 -0.1 5,471,907 - BWI76_RS26435 0.37 +0.5 5,471,926 + BWI76_RS26435 0.40 -0.6
Or see this region's nucleotide sequence