Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26080 and BWI76_RS26085 are separated by 84 nucleotides BWI76_RS26085 and BWI76_RS26090 are separated by 54 nucleotides BWI76_RS26090 and BWI76_RS26095 are separated by 19 nucleotides BWI76_RS26095 and BWI76_RS26100 are separated by 10 nucleotides
BWI76_RS26080: BWI76_RS26080 - cell division protein DamX, at 5,388,780 to 5,390,093
_RS26080
BWI76_RS26085: BWI76_RS26085 - 3-dehydroquinate synthase, at 5,390,178 to 5,391,272
_RS26085
BWI76_RS26090: BWI76_RS26090 - shikimate kinase, at 5,391,327 to 5,391,848
_RS26090
BWI76_RS26095: BWI76_RS26095 - shikimate kinase, at 5,391,868 to 5,392,106
_RS26095
BWI76_RS26100: BWI76_RS26100 - DNA transporter HofQ, at 5,392,117 to 5,393,358
_RS26100
Position (kb) 5390
5391
5392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5389.503 kb on + strand, within BWI76_RS26080 at 5389.535 kb on - strand, within BWI76_RS26080 at 5389.670 kb on + strand, within BWI76_RS26080 at 5389.675 kb on + strand, within BWI76_RS26080 at 5390.224 kb on - strand at 5390.276 kb on - strand at 5390.276 kb on - strand at 5390.737 kb on - strand, within BWI76_RS26085 at 5391.051 kb on - strand, within BWI76_RS26085 at 5391.138 kb on - strand, within BWI76_RS26085 at 5391.913 kb on - strand, within BWI76_RS26095 at 5391.929 kb on - strand, within BWI76_RS26095 at 5392.235 kb on - strand at 5392.260 kb on + strand, within BWI76_RS26100
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,389,503 + BWI76_RS26080 0.55 -3.4 5,389,535 - BWI76_RS26080 0.57 -2.3 5,389,670 + BWI76_RS26080 0.68 -3.1 5,389,675 + BWI76_RS26080 0.68 -2.5 5,390,224 - -0.3 5,390,276 - +1.1 5,390,276 - -1.2 5,390,737 - BWI76_RS26085 0.51 -0.4 5,391,051 - BWI76_RS26085 0.80 -1.3 5,391,138 - BWI76_RS26085 0.88 -1.0 5,391,913 - BWI76_RS26095 0.19 +2.0 5,391,929 - BWI76_RS26095 0.26 -1.6 5,392,235 - -0.2 5,392,260 + BWI76_RS26100 0.12 -1.2
Or see this region's nucleotide sequence