Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25470 and BWI76_RS25475 are separated by 88 nucleotides BWI76_RS25475 and BWI76_RS25480 are separated by 78 nucleotides
BWI76_RS25470: BWI76_RS25470 - metalloprotease TldD, at 5,291,488 to 5,292,933
_RS25470
BWI76_RS25475: BWI76_RS25475 - TIGR02099 family protein, at 5,293,022 to 5,296,819
_RS25475
BWI76_RS25480: BWI76_RS25480 - ribonuclease E/G, at 5,296,898 to 5,298,367
_RS25480
Position (kb) 5293
5294
5295
5296
5297 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5292.057 kb on + strand, within BWI76_RS25470 at 5292.057 kb on + strand, within BWI76_RS25470 at 5292.065 kb on - strand, within BWI76_RS25470 at 5292.065 kb on - strand, within BWI76_RS25470 at 5292.159 kb on + strand, within BWI76_RS25470 at 5292.159 kb on + strand, within BWI76_RS25470 at 5292.511 kb on - strand, within BWI76_RS25470 at 5292.612 kb on - strand, within BWI76_RS25470 at 5292.671 kb on - strand, within BWI76_RS25470 at 5293.227 kb on + strand at 5293.272 kb on - strand at 5293.291 kb on + strand at 5293.434 kb on - strand, within BWI76_RS25475 at 5293.557 kb on - strand, within BWI76_RS25475 at 5293.562 kb on - strand, within BWI76_RS25475 at 5294.015 kb on - strand, within BWI76_RS25475 at 5294.151 kb on + strand, within BWI76_RS25475 at 5294.159 kb on - strand, within BWI76_RS25475 at 5294.159 kb on - strand, within BWI76_RS25475 at 5294.161 kb on + strand, within BWI76_RS25475 at 5294.213 kb on - strand, within BWI76_RS25475 at 5294.235 kb on + strand at 5294.235 kb on + strand, within BWI76_RS25475 at 5294.264 kb on + strand, within BWI76_RS25475 at 5294.272 kb on - strand, within BWI76_RS25475 at 5294.343 kb on - strand, within BWI76_RS25475 at 5294.361 kb on + strand, within BWI76_RS25475 at 5294.362 kb on - strand, within BWI76_RS25475 at 5294.728 kb on + strand, within BWI76_RS25475 at 5294.732 kb on + strand, within BWI76_RS25475 at 5295.162 kb on - strand, within BWI76_RS25475 at 5295.363 kb on - strand, within BWI76_RS25475 at 5295.397 kb on + strand, within BWI76_RS25475 at 5295.432 kb on - strand, within BWI76_RS25475 at 5295.599 kb on - strand, within BWI76_RS25475 at 5295.610 kb on + strand, within BWI76_RS25475 at 5295.784 kb on + strand, within BWI76_RS25475 at 5295.784 kb on + strand, within BWI76_RS25475 at 5296.213 kb on + strand, within BWI76_RS25475 at 5296.223 kb on + strand, within BWI76_RS25475 at 5296.386 kb on - strand, within BWI76_RS25475 at 5296.386 kb on - strand, within BWI76_RS25475 at 5296.425 kb on + strand, within BWI76_RS25475 at 5296.860 kb on - strand at 5297.232 kb on - strand, within BWI76_RS25480 at 5297.312 kb on + strand, within BWI76_RS25480 at 5297.525 kb on - strand, within BWI76_RS25480 at 5297.591 kb on - strand, within BWI76_RS25480 at 5297.593 kb on + strand, within BWI76_RS25480 at 5297.654 kb on + strand, within BWI76_RS25480
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,292,057 + BWI76_RS25470 0.39 -0.2 5,292,057 + BWI76_RS25470 0.39 -1.7 5,292,065 - BWI76_RS25470 0.40 +0.2 5,292,065 - BWI76_RS25470 0.40 +0.9 5,292,159 + BWI76_RS25470 0.46 -0.2 5,292,159 + BWI76_RS25470 0.46 -0.5 5,292,511 - BWI76_RS25470 0.71 +0.4 5,292,612 - BWI76_RS25470 0.78 +0.3 5,292,671 - BWI76_RS25470 0.82 +0.8 5,293,227 + -1.4 5,293,272 - -1.2 5,293,291 + -0.9 5,293,434 - BWI76_RS25475 0.11 -0.6 5,293,557 - BWI76_RS25475 0.14 -0.8 5,293,562 - BWI76_RS25475 0.14 -1.3 5,294,015 - BWI76_RS25475 0.26 +0.5 5,294,151 + BWI76_RS25475 0.30 -1.7 5,294,159 - BWI76_RS25475 0.30 -0.4 5,294,159 - BWI76_RS25475 0.30 -1.1 5,294,161 + BWI76_RS25475 0.30 -0.9 5,294,213 - BWI76_RS25475 0.31 -1.5 5,294,235 + -1.0 5,294,235 + BWI76_RS25475 0.32 -1.4 5,294,264 + BWI76_RS25475 0.33 -2.2 5,294,272 - BWI76_RS25475 0.33 -0.7 5,294,343 - BWI76_RS25475 0.35 -1.4 5,294,361 + BWI76_RS25475 0.35 -2.0 5,294,362 - BWI76_RS25475 0.35 -1.0 5,294,728 + BWI76_RS25475 0.45 -1.3 5,294,732 + BWI76_RS25475 0.45 -0.8 5,295,162 - BWI76_RS25475 0.56 -1.7 5,295,363 - BWI76_RS25475 0.62 -0.2 5,295,397 + BWI76_RS25475 0.63 -1.1 5,295,432 - BWI76_RS25475 0.63 -1.1 5,295,599 - BWI76_RS25475 0.68 -2.9 5,295,610 + BWI76_RS25475 0.68 -2.3 5,295,784 + BWI76_RS25475 0.73 -1.5 5,295,784 + BWI76_RS25475 0.73 +0.2 5,296,213 + BWI76_RS25475 0.84 -0.5 5,296,223 + BWI76_RS25475 0.84 -2.5 5,296,386 - BWI76_RS25475 0.89 -1.2 5,296,386 - BWI76_RS25475 0.89 -0.2 5,296,425 + BWI76_RS25475 0.90 -2.3 5,296,860 - -0.2 5,297,232 - BWI76_RS25480 0.23 +0.5 5,297,312 + BWI76_RS25480 0.28 -0.4 5,297,525 - BWI76_RS25480 0.43 -0.3 5,297,591 - BWI76_RS25480 0.47 +1.0 5,297,593 + BWI76_RS25480 0.47 +1.6 5,297,654 + BWI76_RS25480 0.51 -0.8
Or see this region's nucleotide sequence