Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19835 and BWI76_RS19840 are separated by 179 nucleotides BWI76_RS19840 and BWI76_RS19845 are separated by 19 nucleotides BWI76_RS19845 and BWI76_RS19850 are separated by 77 nucleotides BWI76_RS19850 and BWI76_RS19855 are separated by 178 nucleotides
BWI76_RS19835: BWI76_RS19835 - nucleoid-associated protein YejK, at 4,147,676 to 4,148,683
_RS19835
BWI76_RS19840: BWI76_RS19840 - hypothetical protein, at 4,148,863 to 4,149,090
_RS19840
BWI76_RS19845: BWI76_RS19845 - phosphatase, at 4,149,110 to 4,150,870
_RS19845
BWI76_RS19850: BWI76_RS19850 - tRNA-Pro, at 4,150,948 to 4,151,024
_RS19850
BWI76_RS19855: BWI76_RS19855 - AI-2E family transporter, at 4,151,203 to 4,152,309
_RS19855
Position (kb) 4149
4150
4151 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4148.466 kb on + strand, within BWI76_RS19835 at 4148.466 kb on + strand, within BWI76_RS19835 at 4148.474 kb on - strand, within BWI76_RS19835 at 4148.829 kb on - strand at 4148.885 kb on + strand at 4148.948 kb on + strand, within BWI76_RS19840 at 4149.685 kb on + strand, within BWI76_RS19845 at 4149.976 kb on + strand, within BWI76_RS19845 at 4149.999 kb on + strand, within BWI76_RS19845 at 4150.352 kb on + strand, within BWI76_RS19845 at 4150.429 kb on + strand, within BWI76_RS19845 at 4150.603 kb on + strand, within BWI76_RS19845 at 4150.661 kb on - strand, within BWI76_RS19845 at 4150.717 kb on + strand at 4150.970 kb on - strand, within BWI76_RS19850 at 4150.970 kb on - strand, within BWI76_RS19850 at 4150.977 kb on + strand, within BWI76_RS19850 at 4151.335 kb on - strand, within BWI76_RS19855 at 4151.335 kb on - strand, within BWI76_RS19855 at 4151.447 kb on - strand, within BWI76_RS19855 at 4151.480 kb on + strand, within BWI76_RS19855 at 4151.513 kb on - strand, within BWI76_RS19855 at 4151.622 kb on + strand, within BWI76_RS19855
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 4,148,466 + BWI76_RS19835 0.78 -0.0 4,148,466 + BWI76_RS19835 0.78 -1.1 4,148,474 - BWI76_RS19835 0.79 +0.4 4,148,829 - -0.6 4,148,885 + -1.4 4,148,948 + BWI76_RS19840 0.37 -2.9 4,149,685 + BWI76_RS19845 0.33 -5.4 4,149,976 + BWI76_RS19845 0.49 -3.1 4,149,999 + BWI76_RS19845 0.50 -3.5 4,150,352 + BWI76_RS19845 0.71 -3.7 4,150,429 + BWI76_RS19845 0.75 -2.7 4,150,603 + BWI76_RS19845 0.85 -1.9 4,150,661 - BWI76_RS19845 0.88 -2.6 4,150,717 + -0.9 4,150,970 - BWI76_RS19850 0.29 -0.0 4,150,970 - BWI76_RS19850 0.29 -0.7 4,150,977 + BWI76_RS19850 0.38 +0.5 4,151,335 - BWI76_RS19855 0.12 +0.7 4,151,335 - BWI76_RS19855 0.12 +0.6 4,151,447 - BWI76_RS19855 0.22 +0.2 4,151,480 + BWI76_RS19855 0.25 +0.5 4,151,513 - BWI76_RS19855 0.28 -0.1 4,151,622 + BWI76_RS19855 0.38 +0.3
Or see this region's nucleotide sequence