Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19030 and BWI76_RS19035 are separated by 366 nucleotides BWI76_RS19035 and BWI76_RS19040 are separated by 23 nucleotides
BWI76_RS19030: BWI76_RS19030 - hypothetical protein, at 3,951,731 to 3,952,939
_RS19030
BWI76_RS19035: BWI76_RS19035 - dTDP-rhamnosyl transferase, at 3,953,306 to 3,954,193
_RS19035
BWI76_RS19040: BWI76_RS19040 - hypothetical protein, at 3,954,217 to 3,955,347
_RS19040
Position (kb)
3953
3954
3955 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3952.325 kb on - strand, within BWI76_RS19030 at 3952.331 kb on - strand, within BWI76_RS19030 at 3952.331 kb on - strand, within BWI76_RS19030 at 3952.331 kb on - strand at 3952.331 kb on - strand, within BWI76_RS19030 at 3952.331 kb on - strand, within BWI76_RS19030 at 3952.331 kb on - strand, within BWI76_RS19030 at 3952.331 kb on - strand, within BWI76_RS19030 at 3952.331 kb on - strand, within BWI76_RS19030 at 3952.337 kb on - strand, within BWI76_RS19030 at 3952.405 kb on - strand, within BWI76_RS19030 at 3952.415 kb on - strand, within BWI76_RS19030 at 3952.434 kb on - strand, within BWI76_RS19030 at 3952.526 kb on - strand, within BWI76_RS19030 at 3952.638 kb on - strand, within BWI76_RS19030 at 3952.716 kb on - strand, within BWI76_RS19030 at 3952.729 kb on - strand, within BWI76_RS19030 at 3952.747 kb on - strand, within BWI76_RS19030 at 3952.748 kb on - strand, within BWI76_RS19030 at 3952.793 kb on - strand, within BWI76_RS19030 at 3952.863 kb on - strand at 3952.868 kb on - strand at 3952.868 kb on - strand at 3952.868 kb on - strand at 3952.868 kb on - strand at 3952.868 kb on - strand at 3952.868 kb on - strand at 3952.868 kb on - strand at 3952.918 kb on - strand at 3952.927 kb on - strand at 3952.927 kb on - strand at 3952.927 kb on - strand at 3952.937 kb on - strand at 3952.937 kb on - strand at 3953.018 kb on - strand at 3953.033 kb on - strand at 3953.066 kb on - strand at 3953.199 kb on - strand at 3953.209 kb on - strand at 3953.209 kb on - strand at 3953.512 kb on - strand, within BWI76_RS19035 at 3953.512 kb on - strand, within BWI76_RS19035 at 3953.524 kb on - strand, within BWI76_RS19035 at 3953.539 kb on - strand, within BWI76_RS19035 at 3953.578 kb on - strand, within BWI76_RS19035 at 3953.578 kb on - strand, within BWI76_RS19035 at 3953.578 kb on - strand, within BWI76_RS19035 at 3953.578 kb on - strand, within BWI76_RS19035 at 3953.578 kb on - strand, within BWI76_RS19035 at 3953.578 kb on - strand, within BWI76_RS19035 at 3953.580 kb on - strand, within BWI76_RS19035 at 3953.635 kb on - strand, within BWI76_RS19035 at 3953.638 kb on - strand, within BWI76_RS19035 at 3953.638 kb on - strand, within BWI76_RS19035 at 3953.638 kb on - strand, within BWI76_RS19035 at 3953.645 kb on - strand, within BWI76_RS19035 at 3953.683 kb on - strand, within BWI76_RS19035 at 3953.692 kb on - strand, within BWI76_RS19035 at 3953.709 kb on - strand, within BWI76_RS19035 at 3953.823 kb on - strand, within BWI76_RS19035 at 3953.851 kb on - strand, within BWI76_RS19035 at 3953.859 kb on - strand, within BWI76_RS19035 at 3954.059 kb on - strand, within BWI76_RS19035 at 3954.125 kb on - strand at 3954.253 kb on - strand at 3954.358 kb on - strand, within BWI76_RS19040 at 3954.461 kb on - strand, within BWI76_RS19040 at 3954.496 kb on - strand, within BWI76_RS19040 at 3954.496 kb on - strand, within BWI76_RS19040 at 3954.496 kb on - strand, within BWI76_RS19040 at 3954.506 kb on - strand, within BWI76_RS19040 at 3954.506 kb on - strand, within BWI76_RS19040 at 3954.714 kb on - strand, within BWI76_RS19040 at 3954.782 kb on - strand, within BWI76_RS19040 at 3955.187 kb on - strand, within BWI76_RS19040
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 3,952,325 - BWI76_RS19030 0.49 -0.1 3,952,331 - BWI76_RS19030 0.50 +0.6 3,952,331 - BWI76_RS19030 0.50 -1.1 3,952,331 - -0.7 3,952,331 - BWI76_RS19030 0.50 -0.1 3,952,331 - BWI76_RS19030 0.50 +0.5 3,952,331 - BWI76_RS19030 0.50 +1.0 3,952,331 - BWI76_RS19030 0.50 +1.1 3,952,331 - BWI76_RS19030 0.50 +0.2 3,952,337 - BWI76_RS19030 0.50 +0.3 3,952,405 - BWI76_RS19030 0.56 +0.5 3,952,415 - BWI76_RS19030 0.57 +0.7 3,952,434 - BWI76_RS19030 0.58 -0.5 3,952,526 - BWI76_RS19030 0.66 +0.9 3,952,638 - BWI76_RS19030 0.75 +0.0 3,952,716 - BWI76_RS19030 0.81 +0.3 3,952,729 - BWI76_RS19030 0.83 +1.7 3,952,747 - BWI76_RS19030 0.84 +0.7 3,952,748 - BWI76_RS19030 0.84 +0.6 3,952,793 - BWI76_RS19030 0.88 +0.4 3,952,863 - +0.5 3,952,868 - -0.2 3,952,868 - +0.6 3,952,868 - +0.1 3,952,868 - -0.5 3,952,868 - +0.0 3,952,868 - -0.4 3,952,868 - +1.0 3,952,918 - +0.6 3,952,927 - -0.1 3,952,927 - +0.2 3,952,927 - +0.2 3,952,937 - +0.6 3,952,937 - +0.4 3,953,018 - +0.6 3,953,033 - +1.7 3,953,066 - +0.5 3,953,199 - +2.4 3,953,209 - -1.2 3,953,209 - +0.6 3,953,512 - BWI76_RS19035 0.23 +0.1 3,953,512 - BWI76_RS19035 0.23 -1.9 3,953,524 - BWI76_RS19035 0.25 -2.7 3,953,539 - BWI76_RS19035 0.26 +0.2 3,953,578 - BWI76_RS19035 0.31 -2.3 3,953,578 - BWI76_RS19035 0.31 -0.5 3,953,578 - BWI76_RS19035 0.31 -2.3 3,953,578 - BWI76_RS19035 0.31 -2.1 3,953,578 - BWI76_RS19035 0.31 -3.2 3,953,578 - BWI76_RS19035 0.31 -2.1 3,953,580 - BWI76_RS19035 0.31 -2.3 3,953,635 - BWI76_RS19035 0.37 -1.8 3,953,638 - BWI76_RS19035 0.37 -1.7 3,953,638 - BWI76_RS19035 0.37 -1.7 3,953,638 - BWI76_RS19035 0.37 -0.1 3,953,645 - BWI76_RS19035 0.38 -0.3 3,953,683 - BWI76_RS19035 0.42 -3.1 3,953,692 - BWI76_RS19035 0.43 +1.7 3,953,709 - BWI76_RS19035 0.45 -1.0 3,953,823 - BWI76_RS19035 0.58 +0.3 3,953,851 - BWI76_RS19035 0.61 -3.0 3,953,859 - BWI76_RS19035 0.62 -2.2 3,954,059 - BWI76_RS19035 0.85 +0.5 3,954,125 - -3.8 3,954,253 - +0.1 3,954,358 - BWI76_RS19040 0.12 -2.1 3,954,461 - BWI76_RS19040 0.22 -4.6 3,954,496 - BWI76_RS19040 0.25 -4.3 3,954,496 - BWI76_RS19040 0.25 -1.6 3,954,496 - BWI76_RS19040 0.25 -3.5 3,954,506 - BWI76_RS19040 0.26 -0.5 3,954,506 - BWI76_RS19040 0.26 -2.4 3,954,714 - BWI76_RS19040 0.44 -2.4 3,954,782 - BWI76_RS19040 0.50 -4.2 3,955,187 - BWI76_RS19040 0.86 -3.2
Or see this region's nucleotide sequence