Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14950

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14945 and BWI76_RS14950 are separated by 4 nucleotidesBWI76_RS14950 and BWI76_RS14955 are separated by 3 nucleotides BWI76_RS14945: BWI76_RS14945 - PTS system, cellobiose-specific IIC component, at 3,131,958 to 3,133,277 _RS14945 BWI76_RS14950: BWI76_RS14950 - glycosylasparaginase, at 3,133,282 to 3,134,235 _RS14950 BWI76_RS14955: BWI76_RS14955 - peptidase M17 leucyl aminopeptidase domain-containing protein, at 3,134,239 to 3,135,594 _RS14955 Position (kb) 3133 3134 3135Strain fitness (log2 ratio) -2 -1 0 1at 3132.620 kb on + strand, within BWI76_RS14945at 3132.657 kb on + strand, within BWI76_RS14945at 3133.014 kb on + strand, within BWI76_RS14945at 3133.024 kb on - strand, within BWI76_RS14945at 3133.074 kb on - strand, within BWI76_RS14945at 3133.131 kb on + strand, within BWI76_RS14945at 3133.370 kb on + strandat 3133.421 kb on - strandat 3133.637 kb on + strand, within BWI76_RS14950at 3133.851 kb on - strand, within BWI76_RS14950at 3133.851 kb on - strand, within BWI76_RS14950at 3134.204 kb on - strandat 3134.232 kb on - strandat 3134.529 kb on - strand, within BWI76_RS14955at 3134.561 kb on + strand, within BWI76_RS14955at 3135.083 kb on + strand, within BWI76_RS14955at 3135.123 kb on + strand, within BWI76_RS14955

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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3,132,620 + BWI76_RS14945 0.50 -0.2
3,132,657 + BWI76_RS14945 0.53 -0.0
3,133,014 + BWI76_RS14945 0.80 -0.8
3,133,024 - BWI76_RS14945 0.81 -0.1
3,133,074 - BWI76_RS14945 0.85 -1.1
3,133,131 + BWI76_RS14945 0.89 +0.5
3,133,370 + -1.6
3,133,421 - -0.6
3,133,637 + BWI76_RS14950 0.37 -1.2
3,133,851 - BWI76_RS14950 0.60 -1.8
3,133,851 - BWI76_RS14950 0.60 -0.3
3,134,204 - +0.3
3,134,232 - -0.9
3,134,529 - BWI76_RS14955 0.21 -0.4
3,134,561 + BWI76_RS14955 0.24 -0.1
3,135,083 + BWI76_RS14955 0.62 -0.8
3,135,123 + BWI76_RS14955 0.65 +1.2

Or see this region's nucleotide sequence