Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07430 and BWI76_RS07435 are separated by 238 nucleotides BWI76_RS07435 and BWI76_RS07440 are separated by 5 nucleotides
BWI76_RS07430: BWI76_RS07430 - NUDIX hydrolase, at 1,568,204 to 1,568,575
_RS07430
BWI76_RS07435: BWI76_RS07435 - LacI family transcriptional regulator, at 1,568,814 to 1,569,794
_RS07435
BWI76_RS07440: BWI76_RS07440 - miniconductance mechanosensitive channel, at 1,569,800 to 1,571,044
_RS07440
Position (kb)
1568
1569
1570 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1567.880 kb on - strand at 1567.888 kb on + strand at 1567.972 kb on + strand at 1567.984 kb on + strand at 1568.037 kb on + strand at 1568.090 kb on + strand at 1568.098 kb on - strand at 1568.099 kb on - strand at 1568.100 kb on + strand at 1568.103 kb on - strand at 1568.105 kb on + strand at 1568.202 kb on + strand at 1568.223 kb on + strand at 1568.278 kb on + strand, within BWI76_RS07430 at 1568.286 kb on - strand, within BWI76_RS07430 at 1568.322 kb on - strand, within BWI76_RS07430 at 1568.368 kb on + strand, within BWI76_RS07430 at 1568.370 kb on - strand, within BWI76_RS07430 at 1568.502 kb on + strand, within BWI76_RS07430 at 1568.510 kb on - strand, within BWI76_RS07430 at 1568.527 kb on - strand, within BWI76_RS07430 at 1568.606 kb on + strand at 1568.614 kb on - strand at 1568.614 kb on - strand at 1568.631 kb on - strand at 1568.659 kb on - strand at 1568.721 kb on - strand at 1568.848 kb on + strand at 1568.928 kb on + strand, within BWI76_RS07435 at 1569.108 kb on + strand, within BWI76_RS07435 at 1569.340 kb on - strand, within BWI76_RS07435 at 1569.502 kb on + strand, within BWI76_RS07435 at 1569.616 kb on + strand, within BWI76_RS07435 at 1569.635 kb on + strand, within BWI76_RS07435 at 1569.741 kb on + strand at 1569.795 kb on + strand at 1569.920 kb on + strand at 1569.920 kb on + strand at 1569.926 kb on - strand, within BWI76_RS07440 at 1569.928 kb on - strand, within BWI76_RS07440 at 1569.928 kb on - strand, within BWI76_RS07440 at 1569.928 kb on - strand, within BWI76_RS07440 at 1569.928 kb on - strand, within BWI76_RS07440 at 1570.063 kb on + strand, within BWI76_RS07440 at 1570.172 kb on - strand, within BWI76_RS07440 at 1570.330 kb on + strand, within BWI76_RS07440 at 1570.333 kb on - strand, within BWI76_RS07440 at 1570.363 kb on + strand, within BWI76_RS07440 at 1570.371 kb on - strand, within BWI76_RS07440 at 1570.371 kb on - strand, within BWI76_RS07440 at 1570.393 kb on - strand, within BWI76_RS07440 at 1570.468 kb on - strand, within BWI76_RS07440 at 1570.716 kb on + strand, within BWI76_RS07440
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 1,567,880 - +0.2 1,567,888 + +2.5 1,567,972 + +1.2 1,567,984 + +0.5 1,568,037 + -0.2 1,568,090 + -0.8 1,568,098 - -1.4 1,568,099 - -0.1 1,568,100 + -2.8 1,568,103 - +1.0 1,568,105 + -0.2 1,568,202 + +0.0 1,568,223 + -0.9 1,568,278 + BWI76_RS07430 0.20 -0.9 1,568,286 - BWI76_RS07430 0.22 -1.1 1,568,322 - BWI76_RS07430 0.32 +0.6 1,568,368 + BWI76_RS07430 0.44 +0.4 1,568,370 - BWI76_RS07430 0.45 -0.1 1,568,502 + BWI76_RS07430 0.80 +0.4 1,568,510 - BWI76_RS07430 0.82 +0.9 1,568,527 - BWI76_RS07430 0.87 +0.2 1,568,606 + -0.1 1,568,614 - -0.5 1,568,614 - +0.1 1,568,631 - +1.5 1,568,659 - -0.1 1,568,721 - -0.4 1,568,848 + -0.7 1,568,928 + BWI76_RS07435 0.12 +0.4 1,569,108 + BWI76_RS07435 0.30 +0.8 1,569,340 - BWI76_RS07435 0.54 -1.1 1,569,502 + BWI76_RS07435 0.70 +0.3 1,569,616 + BWI76_RS07435 0.82 +0.2 1,569,635 + BWI76_RS07435 0.84 +0.7 1,569,741 + -0.3 1,569,795 + -0.6 1,569,920 + -0.5 1,569,920 + -0.4 1,569,926 - BWI76_RS07440 0.10 -0.6 1,569,928 - BWI76_RS07440 0.10 -0.2 1,569,928 - BWI76_RS07440 0.10 -0.9 1,569,928 - BWI76_RS07440 0.10 -0.0 1,569,928 - BWI76_RS07440 0.10 -0.5 1,570,063 + BWI76_RS07440 0.21 +0.5 1,570,172 - BWI76_RS07440 0.30 -0.2 1,570,330 + BWI76_RS07440 0.43 +1.2 1,570,333 - BWI76_RS07440 0.43 +0.1 1,570,363 + BWI76_RS07440 0.45 +0.2 1,570,371 - BWI76_RS07440 0.46 -0.0 1,570,371 - BWI76_RS07440 0.46 +0.6 1,570,393 - BWI76_RS07440 0.48 -0.8 1,570,468 - BWI76_RS07440 0.54 -1.1 1,570,716 + BWI76_RS07440 0.74 +0.1
Or see this region's nucleotide sequence