Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04045 and BWI76_RS04050 are separated by 47 nucleotides BWI76_RS04050 and BWI76_RS04055 are separated by 108 nucleotides
BWI76_RS04045: BWI76_RS04045 - PTS system lactose/cellobiose-specific transporter subunit IIC, at 835,914 to 837,257
_RS04045
BWI76_RS04050: BWI76_RS04050 - hydroxamate siderophore iron reductase FhuF, at 837,305 to 838,093
_RS04050
BWI76_RS04055: BWI76_RS04055 - GGDEF domain-containing protein, at 838,202 to 839,248
_RS04055
Position (kb) 837
838
839 Strain fitness (log2 ratio) -1
0
1
2 at 836.348 kb on - strand, within BWI76_RS04045 at 836.524 kb on + strand, within BWI76_RS04045 at 836.531 kb on - strand, within BWI76_RS04045 at 836.660 kb on - strand, within BWI76_RS04045 at 836.675 kb on - strand, within BWI76_RS04045 at 836.842 kb on + strand, within BWI76_RS04045 at 837.008 kb on + strand, within BWI76_RS04045 at 837.011 kb on - strand, within BWI76_RS04045 at 837.016 kb on - strand, within BWI76_RS04045 at 837.078 kb on - strand, within BWI76_RS04045 at 837.143 kb on - strand at 837.337 kb on - strand at 837.366 kb on - strand at 837.434 kb on - strand, within BWI76_RS04050 at 837.572 kb on + strand, within BWI76_RS04050 at 837.777 kb on - strand at 837.839 kb on + strand, within BWI76_RS04050 at 837.906 kb on + strand, within BWI76_RS04050 at 837.946 kb on - strand, within BWI76_RS04050 at 837.956 kb on - strand, within BWI76_RS04050 at 837.970 kb on - strand, within BWI76_RS04050 at 838.030 kb on + strand at 838.032 kb on + strand at 838.032 kb on + strand at 838.032 kb on + strand at 838.040 kb on - strand at 838.308 kb on - strand, within BWI76_RS04055 at 838.405 kb on - strand, within BWI76_RS04055 at 838.463 kb on + strand, within BWI76_RS04055 at 838.534 kb on + strand, within BWI76_RS04055 at 838.535 kb on + strand, within BWI76_RS04055 at 838.605 kb on - strand, within BWI76_RS04055 at 838.605 kb on - strand, within BWI76_RS04055 at 838.607 kb on + strand, within BWI76_RS04055 at 838.607 kb on + strand at 838.610 kb on - strand, within BWI76_RS04055 at 838.615 kb on - strand, within BWI76_RS04055 at 838.616 kb on - strand, within BWI76_RS04055 at 838.624 kb on - strand, within BWI76_RS04055 at 838.660 kb on - strand, within BWI76_RS04055 at 838.662 kb on + strand, within BWI76_RS04055 at 838.677 kb on + strand, within BWI76_RS04055 at 838.690 kb on + strand, within BWI76_RS04055 at 838.690 kb on + strand, within BWI76_RS04055 at 838.698 kb on - strand at 838.705 kb on - strand, within BWI76_RS04055 at 838.706 kb on - strand, within BWI76_RS04055 at 838.732 kb on - strand, within BWI76_RS04055 at 838.759 kb on + strand, within BWI76_RS04055 at 838.767 kb on - strand, within BWI76_RS04055 at 838.769 kb on + strand, within BWI76_RS04055 at 838.783 kb on - strand, within BWI76_RS04055 at 838.802 kb on + strand, within BWI76_RS04055 at 838.803 kb on + strand, within BWI76_RS04055 at 838.810 kb on - strand, within BWI76_RS04055 at 838.811 kb on - strand, within BWI76_RS04055 at 838.811 kb on - strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.828 kb on - strand, within BWI76_RS04055 at 838.848 kb on - strand, within BWI76_RS04055 at 838.848 kb on - strand, within BWI76_RS04055 at 838.848 kb on - strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.857 kb on - strand, within BWI76_RS04055 at 838.867 kb on - strand, within BWI76_RS04055 at 838.867 kb on - strand, within BWI76_RS04055 at 838.871 kb on + strand, within BWI76_RS04055 at 838.871 kb on - strand, within BWI76_RS04055 at 838.876 kb on + strand, within BWI76_RS04055 at 838.876 kb on - strand, within BWI76_RS04055 at 838.942 kb on + strand, within BWI76_RS04055 at 838.987 kb on + strand, within BWI76_RS04055 at 838.996 kb on + strand, within BWI76_RS04055 at 839.001 kb on + strand, within BWI76_RS04055 at 839.001 kb on + strand, within BWI76_RS04055 at 839.001 kb on + strand, within BWI76_RS04055 at 839.004 kb on - strand, within BWI76_RS04055 at 839.004 kb on - strand, within BWI76_RS04055 at 839.009 kb on - strand, within BWI76_RS04055 at 839.009 kb on - strand, within BWI76_RS04055 at 839.009 kb on - strand, within BWI76_RS04055 at 839.011 kb on + strand, within BWI76_RS04055 at 839.011 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on - strand, within BWI76_RS04055 at 839.074 kb on - strand, within BWI76_RS04055 at 839.075 kb on + strand, within BWI76_RS04055 at 839.075 kb on + strand at 839.075 kb on + strand, within BWI76_RS04055 at 839.075 kb on + strand, within BWI76_RS04055 at 839.075 kb on - strand, within BWI76_RS04055 at 839.080 kb on + strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.088 kb on - strand, within BWI76_RS04055 at 839.088 kb on - strand, within BWI76_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 836,348 - BWI76_RS04045 0.32 -0.7 836,524 + BWI76_RS04045 0.45 +0.2 836,531 - BWI76_RS04045 0.46 +0.3 836,660 - BWI76_RS04045 0.56 +0.5 836,675 - BWI76_RS04045 0.57 -0.6 836,842 + BWI76_RS04045 0.69 +0.2 837,008 + BWI76_RS04045 0.81 -0.2 837,011 - BWI76_RS04045 0.82 +0.8 837,016 - BWI76_RS04045 0.82 +0.4 837,078 - BWI76_RS04045 0.87 -0.0 837,143 - -0.4 837,337 - +1.0 837,366 - +0.2 837,434 - BWI76_RS04050 0.16 -1.3 837,572 + BWI76_RS04050 0.34 -1.7 837,777 - +1.2 837,839 + BWI76_RS04050 0.68 -0.3 837,906 + BWI76_RS04050 0.76 -1.7 837,946 - BWI76_RS04050 0.81 -0.7 837,956 - BWI76_RS04050 0.83 -0.6 837,970 - BWI76_RS04050 0.84 -0.5 838,030 + -0.9 838,032 + -0.8 838,032 + -0.3 838,032 + +0.6 838,040 - -0.8 838,308 - BWI76_RS04055 0.10 +0.6 838,405 - BWI76_RS04055 0.19 -0.2 838,463 + BWI76_RS04055 0.25 +0.7 838,534 + BWI76_RS04055 0.32 +0.1 838,535 + BWI76_RS04055 0.32 +0.5 838,605 - BWI76_RS04055 0.38 +0.7 838,605 - BWI76_RS04055 0.38 +0.8 838,607 + BWI76_RS04055 0.39 +0.6 838,607 + +1.0 838,610 - BWI76_RS04055 0.39 +0.3 838,615 - BWI76_RS04055 0.39 +0.9 838,616 - BWI76_RS04055 0.40 +0.5 838,624 - BWI76_RS04055 0.40 +1.0 838,660 - BWI76_RS04055 0.44 -0.1 838,662 + BWI76_RS04055 0.44 -0.0 838,677 + BWI76_RS04055 0.45 +1.3 838,690 + BWI76_RS04055 0.47 -0.5 838,690 + BWI76_RS04055 0.47 +0.9 838,698 - -1.6 838,705 - BWI76_RS04055 0.48 +1.9 838,706 - BWI76_RS04055 0.48 -0.0 838,732 - BWI76_RS04055 0.51 +0.5 838,759 + BWI76_RS04055 0.53 +0.4 838,767 - BWI76_RS04055 0.54 -1.5 838,769 + BWI76_RS04055 0.54 +0.5 838,783 - BWI76_RS04055 0.55 -0.8 838,802 + BWI76_RS04055 0.57 +1.3 838,803 + BWI76_RS04055 0.57 +0.6 838,810 - BWI76_RS04055 0.58 +0.2 838,811 - BWI76_RS04055 0.58 +1.1 838,811 - BWI76_RS04055 0.58 +0.9 838,820 + BWI76_RS04055 0.59 +0.7 838,820 + BWI76_RS04055 0.59 +0.6 838,820 + BWI76_RS04055 0.59 +0.1 838,820 + BWI76_RS04055 0.59 +0.3 838,828 - BWI76_RS04055 0.60 +2.5 838,848 - BWI76_RS04055 0.62 -0.5 838,848 - BWI76_RS04055 0.62 -0.6 838,848 - BWI76_RS04055 0.62 -0.0 838,850 + BWI76_RS04055 0.62 +0.6 838,850 + BWI76_RS04055 0.62 +0.3 838,850 + BWI76_RS04055 0.62 +1.1 838,850 + BWI76_RS04055 0.62 +1.0 838,857 - BWI76_RS04055 0.63 +0.9 838,867 - BWI76_RS04055 0.64 +0.6 838,867 - BWI76_RS04055 0.64 +1.0 838,871 + BWI76_RS04055 0.64 -1.0 838,871 - BWI76_RS04055 0.64 +0.6 838,876 + BWI76_RS04055 0.64 +0.2 838,876 - BWI76_RS04055 0.64 +0.4 838,942 + BWI76_RS04055 0.71 -0.1 838,987 + BWI76_RS04055 0.75 +0.3 838,996 + BWI76_RS04055 0.76 +0.4 839,001 + BWI76_RS04055 0.76 +0.9 839,001 + BWI76_RS04055 0.76 -0.2 839,001 + BWI76_RS04055 0.76 +1.1 839,004 - BWI76_RS04055 0.77 +0.5 839,004 - BWI76_RS04055 0.77 +0.1 839,009 - BWI76_RS04055 0.77 -0.5 839,009 - BWI76_RS04055 0.77 +0.3 839,009 - BWI76_RS04055 0.77 +0.7 839,011 + BWI76_RS04055 0.77 +0.6 839,011 + BWI76_RS04055 0.77 +1.3 839,058 + BWI76_RS04055 0.82 +0.8 839,058 + BWI76_RS04055 0.82 +0.2 839,058 + BWI76_RS04055 0.82 +0.9 839,058 + BWI76_RS04055 0.82 +0.8 839,058 + BWI76_RS04055 0.82 -0.0 839,058 + BWI76_RS04055 0.82 +0.2 839,066 + BWI76_RS04055 0.83 +0.7 839,066 + BWI76_RS04055 0.83 +1.2 839,066 + BWI76_RS04055 0.83 +2.1 839,066 + BWI76_RS04055 0.83 +0.7 839,066 - BWI76_RS04055 0.83 +1.0 839,074 - BWI76_RS04055 0.83 +0.6 839,075 + BWI76_RS04055 0.83 +1.0 839,075 + -0.6 839,075 + BWI76_RS04055 0.83 +0.3 839,075 + BWI76_RS04055 0.83 +0.7 839,075 - BWI76_RS04055 0.83 +0.6 839,080 + BWI76_RS04055 0.84 +1.0 839,083 - BWI76_RS04055 0.84 +0.8 839,083 - BWI76_RS04055 0.84 +1.1 839,083 - BWI76_RS04055 0.84 +0.4 839,083 - BWI76_RS04055 0.84 -0.6 839,088 - BWI76_RS04055 0.85 +0.7 839,088 - BWI76_RS04055 0.85 +1.0
Or see this region's nucleotide sequence