Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02045 and BWI76_RS02050 are separated by 103 nucleotides BWI76_RS02050 and BWI76_RS02055 overlap by 8 nucleotides BWI76_RS02055 and BWI76_RS02060 are separated by 607 nucleotides
BWI76_RS02045: BWI76_RS02045 - LysR family transcriptional regulator, at 421,398 to 422,294
_RS02045
BWI76_RS02050: BWI76_RS02050 - CidA/LrgA family protein, at 422,398 to 422,808
_RS02050
BWI76_RS02055: BWI76_RS02055 - murein hydrolase effector protein LrgB, at 422,801 to 423,490
_RS02055
BWI76_RS02060: BWI76_RS02060 - fimbrial chaperone protein, at 424,098 to 424,634
_RS02060
Position (kb) 422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 421.950 kb on + strand, within BWI76_RS02045 at 422.000 kb on + strand, within BWI76_RS02045 at 422.148 kb on + strand, within BWI76_RS02045 at 422.161 kb on - strand, within BWI76_RS02045 at 422.308 kb on + strand at 422.316 kb on - strand at 422.316 kb on - strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.356 kb on + strand at 422.356 kb on + strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.368 kb on - strand at 422.415 kb on - strand at 422.418 kb on + strand at 422.429 kb on + strand at 422.429 kb on + strand at 422.437 kb on - strand at 422.461 kb on + strand, within BWI76_RS02050 at 422.496 kb on + strand, within BWI76_RS02050 at 422.782 kb on + strand at 422.792 kb on + strand at 422.792 kb on + strand at 422.792 kb on + strand at 422.816 kb on - strand at 422.978 kb on - strand, within BWI76_RS02055 at 423.081 kb on + strand, within BWI76_RS02055 at 423.182 kb on + strand, within BWI76_RS02055 at 423.271 kb on - strand, within BWI76_RS02055 at 423.339 kb on - strand, within BWI76_RS02055 at 423.352 kb on - strand, within BWI76_RS02055 at 423.384 kb on + strand, within BWI76_RS02055 at 423.384 kb on + strand, within BWI76_RS02055 at 423.392 kb on - strand, within BWI76_RS02055 at 423.396 kb on + strand, within BWI76_RS02055 at 423.467 kb on + strand at 423.467 kb on + strand at 423.474 kb on + strand at 423.474 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.487 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.493 kb on + strand at 423.500 kb on + strand at 423.503 kb on + strand at 423.511 kb on - strand at 423.522 kb on + strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.530 kb on - strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.621 kb on + strand at 423.861 kb on + strand at 423.861 kb on + strand at 423.878 kb on + strand at 423.899 kb on + strand at 424.006 kb on + strand at 424.076 kb on - strand at 424.082 kb on + strand at 424.122 kb on + strand at 424.128 kb on + strand at 424.133 kb on + strand at 424.148 kb on - strand at 424.150 kb on + strand at 424.157 kb on + strand, within BWI76_RS02060 at 424.158 kb on - strand, within BWI76_RS02060 at 424.158 kb on - strand, within BWI76_RS02060 at 424.165 kb on - strand, within BWI76_RS02060 at 424.176 kb on - strand, within BWI76_RS02060 at 424.181 kb on + strand, within BWI76_RS02060 at 424.181 kb on + strand, within BWI76_RS02060 at 424.183 kb on + strand, within BWI76_RS02060 at 424.183 kb on + strand, within BWI76_RS02060 at 424.183 kb on + strand, within BWI76_RS02060 at 424.183 kb on + strand at 424.183 kb on + strand, within BWI76_RS02060 at 424.183 kb on + strand, within BWI76_RS02060 at 424.183 kb on - strand, within BWI76_RS02060 at 424.191 kb on - strand at 424.191 kb on - strand, within BWI76_RS02060 at 424.191 kb on - strand, within BWI76_RS02060 at 424.191 kb on - strand, within BWI76_RS02060 at 424.191 kb on - strand, within BWI76_RS02060 at 424.191 kb on - strand, within BWI76_RS02060 at 424.191 kb on - strand, within BWI76_RS02060 at 424.191 kb on - strand, within BWI76_RS02060 at 424.209 kb on + strand, within BWI76_RS02060 at 424.209 kb on - strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.214 kb on + strand, within BWI76_RS02060 at 424.219 kb on + strand, within BWI76_RS02060 at 424.222 kb on - strand, within BWI76_RS02060 at 424.222 kb on - strand, within BWI76_RS02060 at 424.222 kb on - strand, within BWI76_RS02060 at 424.222 kb on - strand, within BWI76_RS02060 at 424.222 kb on - strand, within BWI76_RS02060 at 424.222 kb on - strand, within BWI76_RS02060 at 424.240 kb on + strand, within BWI76_RS02060 at 424.240 kb on + strand, within BWI76_RS02060 at 424.259 kb on - strand, within BWI76_RS02060 at 424.292 kb on + strand, within BWI76_RS02060 at 424.295 kb on + strand, within BWI76_RS02060 at 424.300 kb on - strand, within BWI76_RS02060 at 424.301 kb on - strand, within BWI76_RS02060 at 424.303 kb on - strand, within BWI76_RS02060 at 424.313 kb on - strand, within BWI76_RS02060 at 424.318 kb on + strand, within BWI76_RS02060 at 424.318 kb on + strand, within BWI76_RS02060 at 424.323 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.336 kb on + strand, within BWI76_RS02060 at 424.337 kb on + strand, within BWI76_RS02060 at 424.337 kb on + strand, within BWI76_RS02060 at 424.344 kb on - strand, within BWI76_RS02060 at 424.345 kb on - strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.348 kb on + strand, within BWI76_RS02060 at 424.349 kb on - strand, within BWI76_RS02060 at 424.356 kb on - strand, within BWI76_RS02060 at 424.356 kb on - strand, within BWI76_RS02060 at 424.356 kb on - strand, within BWI76_RS02060 at 424.358 kb on + strand, within BWI76_RS02060 at 424.358 kb on + strand, within BWI76_RS02060 at 424.358 kb on + strand, within BWI76_RS02060 at 424.361 kb on - strand, within BWI76_RS02060 at 424.425 kb on + strand, within BWI76_RS02060 at 424.425 kb on + strand, within BWI76_RS02060 at 424.425 kb on + strand, within BWI76_RS02060 at 424.433 kb on + strand, within BWI76_RS02060 at 424.433 kb on + strand, within BWI76_RS02060 at 424.433 kb on + strand, within BWI76_RS02060 at 424.433 kb on + strand, within BWI76_RS02060 at 424.433 kb on + strand, within BWI76_RS02060 at 424.441 kb on - strand, within BWI76_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 421,950 + BWI76_RS02045 0.62 +1.6 422,000 + BWI76_RS02045 0.67 -0.2 422,148 + BWI76_RS02045 0.84 +0.5 422,161 - BWI76_RS02045 0.85 +0.1 422,308 + +0.2 422,316 - +0.8 422,316 - -1.1 422,355 + -0.1 422,355 + +0.3 422,355 + +0.1 422,355 + +0.3 422,355 + -1.3 422,355 + +0.2 422,355 + -0.8 422,356 + +0.1 422,356 + -0.3 422,363 - +0.8 422,363 - -0.1 422,363 - -0.3 422,363 - -0.5 422,363 - -0.3 422,363 - -0.0 422,363 - -0.2 422,363 - +1.4 422,368 - -1.4 422,415 - -0.7 422,418 + -0.4 422,429 + -0.4 422,429 + -0.1 422,437 - +0.2 422,461 + BWI76_RS02050 0.15 +0.6 422,496 + BWI76_RS02050 0.24 +0.2 422,782 + +0.0 422,792 + -0.3 422,792 + +0.8 422,792 + +0.2 422,816 - -1.1 422,978 - BWI76_RS02055 0.26 +0.2 423,081 + BWI76_RS02055 0.41 +0.9 423,182 + BWI76_RS02055 0.55 +3.1 423,271 - BWI76_RS02055 0.68 -1.3 423,339 - BWI76_RS02055 0.78 +0.2 423,352 - BWI76_RS02055 0.80 +0.1 423,384 + BWI76_RS02055 0.84 -0.3 423,384 + BWI76_RS02055 0.84 +1.1 423,392 - BWI76_RS02055 0.86 -0.1 423,396 + BWI76_RS02055 0.86 -0.2 423,467 + +0.0 423,467 + +0.6 423,474 + -0.3 423,474 + -0.9 423,484 + +1.1 423,484 + +0.1 423,484 + +0.9 423,484 + +1.0 423,484 + -1.4 423,484 + -0.7 423,487 - -0.7 423,492 - +2.1 423,492 - +0.5 423,492 - -0.6 423,492 - -0.1 423,492 - +0.1 423,492 - +0.1 423,492 - -0.9 423,492 - -0.1 423,492 - -0.5 423,492 - +0.7 423,492 - -0.3 423,492 - -0.4 423,493 + +0.3 423,500 + +0.3 423,503 + -0.7 423,511 - -1.5 423,522 + -0.3 423,525 - +1.7 423,525 - -0.7 423,525 - -1.3 423,525 - +0.2 423,530 - +0.5 423,559 + +0.1 423,559 + -0.4 423,559 + -0.8 423,559 + +0.2 423,559 + +0.4 423,559 + +0.5 423,559 + +0.2 423,567 - +0.2 423,567 - -0.2 423,567 - +0.3 423,567 - -0.2 423,621 + +0.3 423,861 + +0.1 423,861 + +1.2 423,878 + -0.4 423,899 + +1.0 424,006 + -0.0 424,076 - +0.6 424,082 + +0.1 424,122 + -0.3 424,128 + -0.4 424,133 + +2.6 424,148 - -0.3 424,150 + +2.2 424,157 + BWI76_RS02060 0.11 -1.4 424,158 - BWI76_RS02060 0.11 +0.9 424,158 - BWI76_RS02060 0.11 -3.0 424,165 - BWI76_RS02060 0.12 -1.1 424,176 - BWI76_RS02060 0.15 -0.4 424,181 + BWI76_RS02060 0.15 -1.1 424,181 + BWI76_RS02060 0.15 -1.5 424,183 + BWI76_RS02060 0.16 +0.3 424,183 + BWI76_RS02060 0.16 -0.4 424,183 + BWI76_RS02060 0.16 +0.2 424,183 + +1.6 424,183 + BWI76_RS02060 0.16 -0.3 424,183 + BWI76_RS02060 0.16 -0.7 424,183 - BWI76_RS02060 0.16 -1.4 424,191 - -0.6 424,191 - BWI76_RS02060 0.17 -0.1 424,191 - BWI76_RS02060 0.17 -0.1 424,191 - BWI76_RS02060 0.17 +1.2 424,191 - BWI76_RS02060 0.17 -0.5 424,191 - BWI76_RS02060 0.17 -0.4 424,191 - BWI76_RS02060 0.17 +0.4 424,191 - BWI76_RS02060 0.17 -0.1 424,209 + BWI76_RS02060 0.21 +0.3 424,209 - BWI76_RS02060 0.21 +0.0 424,214 + BWI76_RS02060 0.22 +0.1 424,214 + BWI76_RS02060 0.22 -0.0 424,214 + BWI76_RS02060 0.22 -0.7 424,214 + BWI76_RS02060 0.22 +0.6 424,214 + BWI76_RS02060 0.22 +0.9 424,214 + BWI76_RS02060 0.22 +0.9 424,214 + BWI76_RS02060 0.22 +0.2 424,214 + BWI76_RS02060 0.22 +1.1 424,214 + BWI76_RS02060 0.22 -0.0 424,214 + BWI76_RS02060 0.22 -0.0 424,214 + BWI76_RS02060 0.22 +1.2 424,214 + BWI76_RS02060 0.22 -1.6 424,219 + BWI76_RS02060 0.23 -0.1 424,222 - BWI76_RS02060 0.23 -0.3 424,222 - BWI76_RS02060 0.23 +0.7 424,222 - BWI76_RS02060 0.23 -1.3 424,222 - BWI76_RS02060 0.23 +0.1 424,222 - BWI76_RS02060 0.23 +0.4 424,222 - BWI76_RS02060 0.23 -0.2 424,240 + BWI76_RS02060 0.26 -0.5 424,240 + BWI76_RS02060 0.26 -1.3 424,259 - BWI76_RS02060 0.30 +0.5 424,292 + BWI76_RS02060 0.36 +0.9 424,295 + BWI76_RS02060 0.37 +0.3 424,300 - BWI76_RS02060 0.38 -0.4 424,301 - BWI76_RS02060 0.38 -0.3 424,303 - BWI76_RS02060 0.38 -1.2 424,313 - BWI76_RS02060 0.40 +0.5 424,318 + BWI76_RS02060 0.41 +0.0 424,318 + BWI76_RS02060 0.41 +0.6 424,323 + BWI76_RS02060 0.42 -0.4 424,336 + BWI76_RS02060 0.44 +0.1 424,336 + BWI76_RS02060 0.44 +0.2 424,336 + BWI76_RS02060 0.44 -0.0 424,336 + BWI76_RS02060 0.44 -0.0 424,336 + BWI76_RS02060 0.44 -0.6 424,336 + BWI76_RS02060 0.44 -1.9 424,336 + BWI76_RS02060 0.44 +0.5 424,336 + BWI76_RS02060 0.44 -0.3 424,336 + BWI76_RS02060 0.44 -0.1 424,336 + BWI76_RS02060 0.44 +0.5 424,337 + BWI76_RS02060 0.45 -0.1 424,337 + BWI76_RS02060 0.45 -0.4 424,344 - BWI76_RS02060 0.46 -0.4 424,345 - BWI76_RS02060 0.46 -0.9 424,348 + BWI76_RS02060 0.47 -0.2 424,348 + BWI76_RS02060 0.47 +0.1 424,348 + BWI76_RS02060 0.47 -0.2 424,348 + BWI76_RS02060 0.47 -1.3 424,348 + BWI76_RS02060 0.47 +4.6 424,348 + BWI76_RS02060 0.47 +0.4 424,348 + BWI76_RS02060 0.47 -0.2 424,348 + BWI76_RS02060 0.47 +0.2 424,348 + BWI76_RS02060 0.47 -0.7 424,348 + BWI76_RS02060 0.47 -2.0 424,348 + BWI76_RS02060 0.47 +0.2 424,348 + BWI76_RS02060 0.47 +0.8 424,348 + BWI76_RS02060 0.47 +0.2 424,348 + BWI76_RS02060 0.47 -0.2 424,348 + BWI76_RS02060 0.47 -0.4 424,349 - BWI76_RS02060 0.47 -0.4 424,356 - BWI76_RS02060 0.48 -0.3 424,356 - BWI76_RS02060 0.48 -0.7 424,356 - BWI76_RS02060 0.48 -1.2 424,358 + BWI76_RS02060 0.48 -1.9 424,358 + BWI76_RS02060 0.48 +0.2 424,358 + BWI76_RS02060 0.48 -0.5 424,361 - BWI76_RS02060 0.49 -2.6 424,425 + BWI76_RS02060 0.61 -0.1 424,425 + BWI76_RS02060 0.61 -0.9 424,425 + BWI76_RS02060 0.61 +0.2 424,433 + BWI76_RS02060 0.62 +0.2 424,433 + BWI76_RS02060 0.62 -0.7 424,433 + BWI76_RS02060 0.62 -0.9 424,433 + BWI76_RS02060 0.62 +0.6 424,433 + BWI76_RS02060 0.62 +1.3 424,441 - BWI76_RS02060 0.64 +0.2
Or see this region's nucleotide sequence