Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3084

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
3,908,952	-		BT3083	0.38	-1.0
3,908,957	-		BT3083	0.38	+0.0
3,909,053	+		BT3083	0.45	-1.3
3,909,054	-		BT3083	0.45	-1.7
3,909,054	-		BT3083	0.45	+0.0
3,909,057	+		BT3083	0.46	-0.2
3,909,057	+		BT3083	0.46	-2.0
3,909,058	-		BT3083	0.46	-2.3
3,909,079	+		BT3083	0.47	-1.3
3,909,085	+		BT3083	0.48	-2.2
3,909,086	-		BT3083	0.48	-0.4
3,909,086	-		BT3083	0.48	+0.6
3,909,089	-		BT3083	0.48	+0.0
3,909,111	+		BT3083	0.50	-1.0
3,909,112	-		BT3083	0.50	-2.0
3,909,112	-		BT3083	0.50	-2.0
3,909,122	+		BT3083	0.50	-1.4
3,909,123	-				-0.6
3,909,125	-				-1.0
3,909,193	+		BT3083	0.56	-1.1
3,909,205	+		BT3083	0.57	-0.7
3,909,206	-		BT3083	0.57	-1.6
3,909,206	-		BT3083	0.57	-1.0
3,909,206	-		BT3083	0.57	-1.6
3,909,263	+		BT3083	0.61	-1.2
3,909,263	+		BT3083	0.61	-0.9
3,909,283	+		BT3083	0.63	-2.0
3,909,283	+		BT3083	0.63	-0.4
3,909,284	-		BT3083	0.63	-1.5
3,909,285	+		BT3083	0.63	-0.7
3,909,286	-		BT3083	0.63	-1.8
3,909,291	+		BT3083	0.63	+0.2
3,909,384	-		BT3083	0.70	-1.0
3,909,432	+		BT3083	0.74	-0.6
3,909,432	+		BT3083	0.74	+1.3
3,909,503	+		BT3083	0.79	+0.4
3,909,515	-		BT3083	0.80	-1.8
3,909,527	-		BT3083	0.81	-1.0
3,909,561	-		BT3083	0.84	-4.2
3,909,590	-		BT3083	0.86	-1.3
3,909,634	-		BT3083	0.89	-1.5
3,909,666	+				-2.4
3,909,686	-				-1.0
3,909,760	+				-1.1
3,909,760	+				-0.5
3,909,778	+				-1.6
3,909,847	-				-0.6
3,909,856	-				+0.0
3,909,908	+				-1.6
3,909,924	-				-0.9
3,909,924	-				-1.6
3,910,213	+		BT3084	0.39	-2.0
3,910,214	-		BT3084	0.40	+0.0
3,910,214	-		BT3084	0.40	-0.9
3,910,214	-		BT3084	0.40	-1.6
3,910,218	+		BT3084	0.40	-1.2
3,910,247	+		BT3084	0.44	-1.6
3,910,248	-		BT3084	0.44	-1.6
3,910,311	+		BT3084	0.51	-1.8
3,910,312	-		BT3084	0.51	-1.0
3,910,381	+		BT3084	0.60	-2.0
3,910,381	+		BT3084	0.60	-2.0
3,910,382	-		BT3084	0.60	-1.3
3,910,382	-		BT3084	0.60	-1.0
3,910,383	+		BT3084	0.60	-1.2
3,910,383	+		BT3084	0.60	-2.5
3,910,384	-				-2.0
3,910,386	-		BT3084	0.60	-1.8
3,910,422	+		BT3084	0.65	-1.6
3,910,507	+		BT3084	0.75	+0.0
3,910,545	-		BT3084	0.80	+0.0
3,910,575	-		BT3084	0.83	-2.7
3,910,575	-		BT3084	0.83	-1.5
3,910,601	+		BT3084	0.87	-0.6
3,910,606	+		BT3084	0.87	+0.0
3,910,606	+		BT3084	0.87	-0.6
3,910,607	-		BT3084	0.87	-2.8
3,910,625	+		BT3084	0.90	-1.1
3,910,629	+				+0.0
3,910,697	-				-0.3
3,910,698	+				-1.6
3,910,731	-				+0.0
3,910,769	+				-2.5
3,910,773	-				+0.0
3,910,775	+				-1.2
3,910,776	-				-3.2
3,910,776	-				-1.6
3,910,794	+				+0.0
3,910,794	+				-2.3
3,910,797	+				+0.6
3,910,798	-				-1.4
3,910,798	-				-0.9
3,910,799	+				+0.0
3,910,799	+				-1.0
3,910,819	+				-1.0
3,910,820	-				-2.6
3,910,836	-				+0.0
3,910,841	+				-0.7
3,910,841	+				+1.0
3,910,862	+				-1.5
3,910,923	+				-1.3
3,910,928	+				-1.1
3,910,934	-				-0.7
3,910,948	-				-1.5
3,910,952	+				+0.0
3,910,967	-				-0.3
3,910,993	+				-1.2
3,910,993	+				+0.5
3,910,994	-				-1.5
3,910,994	-				-0.8
3,910,994	-				-1.6
3,911,123	+				+0.7
3,911,176	+		BT3085	0.10	-0.6
3,911,233	+		BT3085	0.13	-1.0
3,911,327	+		BT3085	0.17	-1.0
3,911,349	+		BT3085	0.18	-1.6
3,911,349	+		BT3085	0.18	-0.9
3,911,357	+		BT3085	0.19	+2.0
3,911,372	+		BT3085	0.19	-0.8
3,911,394	+		BT3085	0.20	-0.3
3,911,435	+		BT3085	0.22	+0.6
3,911,493	+		BT3085	0.25	-0.6
3,911,496	-		BT3085	0.25	-2.3
3,911,516	+		BT3085	0.26	+0.0
3,911,516	+		BT3085	0.26	-0.7
3,911,561	+		BT3085	0.28	+0.0
3,911,601	+		BT3085	0.30	-2.8
3,911,602	-		BT3085	0.30	-1.6
3,911,659	-		BT3085	0.33	-1.3